View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16058_low_11 (Length: 425)
Name: NF16058_low_11
Description: NF16058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16058_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 17 - 413
Target Start/End: Original strand, 17376885 - 17377281
Alignment:
| Q |
17 |
aaattcaaatgcatgtgtaagcatagggcaaagtcaaaaatcaagggatcaccaacttaagtttcaagttagagtcttaggctctctaagtcacaaattc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17376885 |
aaattcaaatgcatgtgtaagcatagggcaaagtcaaaaatcaagggaacaccaacttaagtttcaagttagagtcttaggctctctaagtcacaaattc |
17376984 |
T |
|
| Q |
117 |
tcaacaaaaatgggcactcacctcacaaaatcactcattgtagaagaatgtaattgagtctcactaaattgtttatcagcgaataagtcctgctataggg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17376985 |
tcaacaaaaatgggcactcacctcacaaaatcactcattttagaaaaatgtaattgagtctcactaaattgtttatcagcgaataagtcctgctataggg |
17377084 |
T |
|
| Q |
217 |
ttgaccataaacctacttttctactatttctcttgtggaagcaaacatgaatnnnnnnngcactctttaaagtgcttcattttcattatacatgattcac |
316 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
17377085 |
ttgacaataaacctacttttctactatttctcttgtggaagcaaacatgaataaaaaaagcactctttaaagtgcttcattttcattatacatgcttcac |
17377184 |
T |
|
| Q |
317 |
aagaaaatagcttcaaaaaggttacaagtaaaattctagaggaacatgaatcaatgagagatttcactcgaaacatggagaaagggagatattttga |
413 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17377185 |
aagaaaatagcttcaaaaaggttacaagtaaaattctagaggaacataaatcaatgagagatttcactcgaaacatggagaaagggagatattttga |
17377281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 17 - 362
Target Start/End: Original strand, 17382298 - 17382643
Alignment:
| Q |
17 |
aaattcaaatgcatgtgtaagcatagggcaaagtcaaaaatcaagggatcaccaacttaagtttcaagttagagtcttaggctctctaagtcacaaattc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17382298 |
aaattcaaatgcatgtgtaagcatagggcaaagtcaaaaatcaagggatcaccaacttaagtttcaagttagagtcttaggctctctaagtcacaaattc |
17382397 |
T |
|
| Q |
117 |
tcaacaaaaatgggcactcacctcacaaaatcactcattgtagaagaatgtaattgagtctcactaaattgtttatcagcgaataagtcctgctataggg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17382398 |
tcaacaaaaatgggcactcacctcacaaaatcactcattgtagaagaatgtaattgagtctcactaaattgtttatcagcgaataagtcctgctataggg |
17382497 |
T |
|
| Q |
217 |
ttgaccataaacctacttttctactatttctcttgtggaagcaaacatgaatnnnnnnngcactctttaaagtgcttcattttcattatacatgattcac |
316 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
17382498 |
ttgacaataaacctacttttctactatttctcttgtggaagcaaacatgaataaaaaaagcactctttaaagtgcttcattttcattatacatgcttcac |
17382597 |
T |
|
| Q |
317 |
aagaaaatagcttcaaaaaggttacaagtaaaattctagaggaaca |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17382598 |
aagaaaatagcttcaaaaaggttacaagtaaaattctagaggaaca |
17382643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 54 - 204
Target Start/End: Complemental strand, 17322916 - 17322767
Alignment:
| Q |
54 |
aaatcaagggatcaccaacttaagtttcaagttagagtcttaggctctctaagtcacaaattctcaacaaaaatgggcactcacctcacaaaatcactca |
153 |
Q |
| |
|
||||| |||||| | |||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||| | |||||||||||||||||||| |
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|
| T |
17322916 |
aaatctagggataatcaacttaagtttcaagttagagtctttggctctctaagtcacaagttctcaaaaaaaatggg-aatcacctcacaaaatcactca |
17322818 |
T |
|
| Q |
154 |
ttgtagaagaatgtaattgagtctcactaaattgtttatcagcgaataagt |
204 |
Q |
| |
|
|| ||||||| || ||||||||||||||| |||||||| || |||||||| |
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|
| T |
17322817 |
tttcagaagaaggtgattgagtctcactaatttgtttatgagagaataagt |
17322767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 45 - 155
Target Start/End: Complemental strand, 42330188 - 42330079
Alignment:
| Q |
45 |
caaagtcaaaaatcaagggatcaccaacttaagtttcaagttagagtcttaggctctctaagtcacaaattctcaacaaaaatgggcactcacctcacaa |
144 |
Q |
| |
|
||||||| |||||||| ||||||||||| |||||||||||||| | ||||| |||||||||||||| |||||| | ||| ||| |||| |||||||| |
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|
| T |
42330188 |
caaagtccaaaatcaatggatcaccaacctaagtttcaagttaaaatcttaagctctctaagtcaccggttctcatc-aaattggtcactagcctcacaa |
42330090 |
T |
|
| Q |
145 |
aatcactcatt |
155 |
Q |
| |
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|||||||||| |
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|
| T |
42330089 |
gatcactcatt |
42330079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 60 - 143
Target Start/End: Original strand, 16646372 - 16646454
Alignment:
| Q |
60 |
agggatcaccaacttaagtttcaagttagagtcttaggctctctaagtcacaaattctcaacaaaaatgggcactcacctcaca |
143 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||| | || | |||||||| ||||||| ||| ||||||||||||||||| |
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|
| T |
16646372 |
agggatcaccaacctaagtttcaagttagagttttaagttccttgagtcacaagttctcaa-gaaattgggcactcacctcaca |
16646454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 155
Target Start/End: Original strand, 17265373 - 17265446
Alignment:
| Q |
82 |
aagttagagtcttaggctctctaagtcacaaattc-tcaacaaaaatgggcactcacctcacaaaatcactcatt |
155 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||| || |||| |||| || | |||||||||||||||||||||||| |
|
|
| T |
17265373 |
aagttagaatcttaggctctctaaatcacaaaatcctcaagaaaa-tgagaactcacctcacaaaatcactcatt |
17265446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 3012765 - 3012866
Alignment:
| Q |
17 |
aaattcaaatgcatgtgtaagcatagggcaaagtcaaaaatcaagggatcaccaacttaagtttcaagttagagtcttaggctctctaagtcacaaattc |
116 |
Q |
| |
|
|||||||||| | ||| |||||| |||||||| |||| | |||||||||||||| |||||||||||||||| || || ||| |||| |||||| ||| |
|
|
| T |
3012765 |
aaattcaaataaacgtgcaagcattgggcaaagctaaaagttaagggatcaccaacctaagtttcaagttagaatcataagcttcctaaatcacaagttc |
3012864 |
T |
|
| Q |
117 |
tc |
118 |
Q |
| |
|
|| |
|
|
| T |
3012865 |
tc |
3012866 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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