View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16058_low_12 (Length: 397)
Name: NF16058_low_12
Description: NF16058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16058_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 12 - 377
Target Start/End: Complemental strand, 49591214 - 49590849
Alignment:
| Q |
12 |
aagcaaaggaagagaatgttacattgcctcaatgtgatgataaagatgaccttgaattgttcaatcaaagggtagtacaattttcaaagttattgaataa |
111 |
Q |
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| T |
49591214 |
aagcaaaggaagagaatgttacattgcctcaatgtgatgataaagatgaccttgaattgttcaatcaaagggtagtacaattttcaaagttattgaataa |
49591115 |
T |
|
| Q |
112 |
agattcactagagaagttgcattatttgcatgcagtcataactgagactctaagattgtatccggcagttcctcaggtatgcattttttgggtctaggtt |
211 |
Q |
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| T |
49591114 |
agattcactagagaagttgcattatttgcatgcagtcataactgagactctaagattgtatccggcagttcctcaggtatgcattttttgggtctaggtt |
49591015 |
T |
|
| Q |
212 |
gtgcgtggccacattgcacattgtattcagtcacacacatttaaatatatcaataactaataatgtttttgtgcaaatatcaattgttgattgaaggatc |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
49591014 |
gtgcgtggccacattgcacattgtattcagtcacacacatttaaatatatcaataactaataatgttttagtgcaaatatcaattgttgattgaaggatc |
49590915 |
T |
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| Q |
312 |
ccaagggtgtgatagaggatgatgtgttgccggatggtacaaaaataaaagcaggagggatggtaa |
377 |
Q |
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| T |
49590914 |
ccaagggtgtgatagaggatgatgtgttgccggatggtacaaaaataaaagcaggagggatggtaa |
49590849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 12 - 207
Target Start/End: Original strand, 7236809 - 7237004
Alignment:
| Q |
12 |
aagcaaaggaagagaatgttacattgcctcaatgtgatgataaagatgaccttgaattgttcaatcaaagggtagtacaattttcaaagttattgaataa |
111 |
Q |
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|||||||||||||||||||||| |||||||| | ||||||||||||||||| | |||| ||||||||||| || |||||||||||||||||||||||||| |
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| T |
7236809 |
aagcaaaggaagagaatgttaccttgcctcagtatgatgataaagatgaccctaaattattcaatcaaagagttgtacaattttcaaagttattgaataa |
7236908 |
T |
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| Q |
112 |
agattcactagagaagttgcattatttgcatgcagtcataactgagactctaagattgtatccggcagttcctcaggtatgcattttttgggtcta |
207 |
Q |
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| T |
7236909 |
agattcactagagaagttgcattatttgcatgcagtcataactgagacactaagattgtatcctgcggttcctcaggtatgcattttttggatcta |
7237004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 265 - 377
Target Start/End: Original strand, 7237299 - 7237411
Alignment:
| Q |
265 |
taactaataatgtttttgtgcaaatatcaattgttgattgaaggatcccaagggtgtgatagaggatgatgtgttgccggatggtacaaaaataaaagca |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
7237299 |
taactaataatgtttttgtgcaaatatcaattgttgattgaaggatcccaagggtgtgatagaggatgatgtgttgccagatggtaccaaaataaaagca |
7237398 |
T |
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| Q |
365 |
ggagggatggtaa |
377 |
Q |
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||||||||||||| |
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| T |
7237399 |
ggagggatggtaa |
7237411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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