View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16058_low_15 (Length: 352)
Name: NF16058_low_15
Description: NF16058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16058_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 85 - 210
Target Start/End: Original strand, 6366265 - 6366390
Alignment:
| Q |
85 |
actgcagtgaagaaagttttgagcttttgattattggttatatatacatatgcttgtttttaaataatggcttagaacctgtcacattatttatgttcat |
184 |
Q |
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| T |
6366265 |
actgcagtgaagaaagttttgagcttttgattattggttatatatacatatgcttgtttttaaataatggcttagaacctgtcacattatttatgttcat |
6366364 |
T |
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| Q |
185 |
atttgttttatgaataaccactcaat |
210 |
Q |
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| T |
6366365 |
atttgttttgtgaataaccactcaat |
6366390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 225 - 347
Target Start/End: Original strand, 6366460 - 6366582
Alignment:
| Q |
225 |
atagtttagggactaaattgcaataaaatcatgcttttgtggctgaaaagaaagtgaaaaggagactgtagtgtaggttttcatggtttattattctgtt |
324 |
Q |
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| T |
6366460 |
atagtatagggactaaattgcaataaaatcatgctattgtggctgaaaagaaagtgaaaaggagattgtagtgtaggttttcatggtttattattctgtt |
6366559 |
T |
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| Q |
325 |
ctttgttctgccagtattatcta |
347 |
Q |
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| T |
6366560 |
ctttgttctgccagaattgtcta |
6366582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 269 - 335
Target Start/End: Original strand, 6357215 - 6357282
Alignment:
| Q |
269 |
gaaaagaaagtgaaaa-ggagactgtagtgtaggttttcatggtttattattctgttctttgttctgc |
335 |
Q |
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| T |
6357215 |
gaaaaggaagtgaaaaaggagattgtagcgtaggttttcttggtttattattcttttccttgttctgc |
6357282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 209 - 244
Target Start/End: Original strand, 6366413 - 6366448
Alignment:
| Q |
209 |
atagttgtataggagaatagtttagggactaaattg |
244 |
Q |
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| T |
6366413 |
atagttggataggagaatagtttagggactaaattg |
6366448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 319
Target Start/End: Original strand, 6347418 - 6347456
Alignment:
| Q |
281 |
aaaaggagactgtagtgtaggttttcatggtttattatt |
319 |
Q |
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| T |
6347418 |
aaaaggagattgtagtgtaggttttcttggtttattatt |
6347456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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