View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16058_low_2 (Length: 542)
Name: NF16058_low_2
Description: NF16058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16058_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 1 - 524
Target Start/End: Complemental strand, 7908755 - 7908232
Alignment:
| Q |
1 |
tacccgaaagtatgtgtgcagggcggtattgaatgagaatgccttattgtcagtatttttaacttttaactcagtcgaaagacttttagcatttagtgtg |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7908755 |
tacccgaaagtatgtgtgcagagcggtattgaatgagaatgccttattgtcagtatttttaacttttaactcagtcgaaagacttttagcatttagtgtg |
7908656 |
T |
|
| Q |
101 |
acctacaaaaatgaaagcatgaaatcacatcatgatttggtaacagaatcgtaatctagtagtattgaaaatgtgagttgtgcttgaagaaaacaagtcc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
7908655 |
acctacaaaaatgaaagcatgaaatcacatcatgatttggtaacagaatcgtaatctagtagtattgaaaaagtgagttgtgcttgaagaaaacaagtcc |
7908556 |
T |
|
| Q |
201 |
ttgacaaccttatataaagcatgaaagctgaaatcccacatagcacgactatacgtatcatccttcagttccagagttacaacaggatttccctcgacat |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7908555 |
ttgacaaccttatataaagcatgaaagctgaaatcccacatagcacgactatacgtatcatccttcagttccagagttacaacaggatttccctcgacat |
7908456 |
T |
|
| Q |
301 |
tctcagaatcaccaacagtccaatccaaattccttgcaaacccatgctgtcgaaaactcaaccaaacaaacattttaacaagtcatcacagtaaattact |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7908455 |
tctcagaatcaccaacagtccaatccaaattccttgcaaacccatgctgtcgaaaactcaaccaaacaaacattttaacaagtcatcacagtaaattact |
7908356 |
T |
|
| Q |
401 |
cttaattttcagtcaaagagaagcaacttttatcaaccaaatattaagcacaaaagttgcaatcactattttcactaagctacatagaatagcatgtata |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
7908355 |
cttaattttcagtcaaagagaagcaacttttatcaaccaaatattaagcacaaaagttgcaatcactattttcactaagctacataaaatagcatgtata |
7908256 |
T |
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| Q |
501 |
tagccgtcataccaaaaccaatta |
524 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
7908255 |
tagccgtcataccaaaaccaatta |
7908232 |
T |
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