View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16058_low_22 (Length: 317)
Name: NF16058_low_22
Description: NF16058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16058_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 53 - 299
Target Start/End: Complemental strand, 17377796 - 17377552
Alignment:
| Q |
53 |
ttctccaaaaccacacataacaacccatccatcatcctaatttctacacccatacaccaatcccaaaactaataaccatgatcagatcttcaagctacat |
152 |
Q |
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| T |
17377796 |
ttctccaaaaccacatataacaacccatccatcatcctaatttctacacccatgcaccaatcccaaaactaataaccatgatcagatcttcaagctacat |
17377697 |
T |
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| Q |
153 |
caagagataaagacaaaatctagatttatatcaaggatgtgtgaagcaatccaatcaataaggcatccttcttcaaacaatcttttgagcttttattact |
252 |
Q |
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| T |
17377696 |
caagagataaagacaaaatctagatttatatcaagga--tgtgaagcaatccaatcaataaggcatccttcttcaaacaatcttttgagcttttattact |
17377599 |
T |
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| Q |
253 |
cattcactttatttaccttttcatgctaaaacattgaggataatgtc |
299 |
Q |
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| T |
17377598 |
cattcactttatttaccttttcatgctaaaacattgagtataatgtc |
17377552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 53 - 266
Target Start/End: Complemental strand, 17368705 - 17368499
Alignment:
| Q |
53 |
ttctccaaaaccacacataacaacccatccatcatcctaatttctacacccatacac--caatcccaaaactaataaccatgatcagatcttcaagctac |
150 |
Q |
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| T |
17368705 |
ttctccaaaaccacacataacaatccatcc-------taatttctacacccatacacaccaatcccataactaataaccatgatcggatcttcaaggtac |
17368613 |
T |
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| Q |
151 |
atcaagagataaagacaaaatctagatttatatcaaggatgtgtgaagcaatccaatcaataaggcatccttcttcaaacaatcttttgagcttttatta |
250 |
Q |
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| T |
17368612 |
attaagagataaagagaaattctagatttatatcaaggatgtg--aagcaatccaatcaataaggcatccttcttcaaacaatcttttgagctttcatta |
17368515 |
T |
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| Q |
251 |
ctcattcactttattt |
266 |
Q |
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| T |
17368514 |
ctcattcgctttattt |
17368499 |
T |
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