View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16058_low_24 (Length: 293)
Name: NF16058_low_24
Description: NF16058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16058_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 7e-92; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 12 - 277
Target Start/End: Complemental strand, 10906091 - 10905811
Alignment:
| Q |
12 |
atgaactcaccactcttgctatttaaacagcaagggttattttccgatggagattagtcatcattaaacggtgatggaaactccgtacctataacatggt |
111 |
Q |
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| T |
10906091 |
atgaactcaccactcttgctatttatacagcaagggttattttccgacggagattagtcatcattaaacggtgatggaaactccgtacctataacatggt |
10905992 |
T |
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| Q |
112 |
aatccnnnnnnnnnnnnnnnncaaggcaagcaagactttcatgtcacatcaagcccaatttcaagtcgtttcttgcgagaca---------------aaa |
196 |
Q |
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| T |
10905991 |
aatccaaaacaaaacaaaaaacaaggcaagcaagactttcatgtcacgtcaagcccaatttcaagtcgtttcttgcgagacaagctaagggtcttttaaa |
10905892 |
T |
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| Q |
197 |
catgaacacattgtaatggcaccaaccgtgatcttgacagttgacacatgctacttcaagcatggttttcctccaaggttt |
277 |
Q |
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| T |
10905891 |
catgaacacattgtaatggcaccaaccgtgatcttgacagttgacacatgctacttcaagcatggttttcctccaaggttt |
10905811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 275
Target Start/End: Complemental strand, 10860809 - 10860771
Alignment:
| Q |
237 |
ttgacacatgctacttcaagcatggttttcctccaaggt |
275 |
Q |
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| T |
10860809 |
ttgatacatgctacttcaagcatggttttcctccaaggt |
10860771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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