View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16058_low_3 (Length: 525)
Name: NF16058_low_3
Description: NF16058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16058_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 435; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 25 - 506
Target Start/End: Complemental strand, 5267514 - 5267032
Alignment:
| Q |
25 |
tattattaatggaaccaagtaccttttttatcatgatagaaaatatatttatttccatttcttcaaatctctcaacaagtaactataaaaagaggtcatg |
124 |
Q |
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| T |
5267514 |
tattattaatggaaccaagtaccttttttatcatgataaaaaatatatttatttccatttcttcaaatctcttaacaagtaactataaaaagaggtcatg |
5267415 |
T |
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| Q |
125 |
cctttaagcataacatgatgcttaaaccaaatttcacaatcaatcctaagaagatcatacataaatatggaacgaaaataacccccaagcagacattgct |
224 |
Q |
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| T |
5267414 |
cctttaagcataacatgatgcttaaaccaaatttcacaatcaatcctaagaagatcatacataaatatgaaacgaaaataacccccaagcagacattgct |
5267315 |
T |
|
| Q |
225 |
a-agtgttacttgcaaaactaccattagtcatgttggccatctgcttagacaattgtccaatatgagtttcaaaattctttatagaaccttcattgttta |
323 |
Q |
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| T |
5267314 |
atagtgttacttgcaaaactaccattagtcatgttgcccatctgcttagacaattgtccaatatgagtttcaaagttctttatagaaccttcattgttta |
5267215 |
T |
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| Q |
324 |
tatcggcgctctctcaactcctagtcaaagctttgaagttgtcttgtgatatcttaataaattgggcaagagtttcttcaaggctctacttcgtaagctg |
423 |
Q |
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| T |
5267214 |
tatcggcgctctctcgactcttggtcaaagctttgaagttgtcttgtgatatcttaataaactgggcaagagtttcttcaaggctctacttcgtaagctg |
5267115 |
T |
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| Q |
424 |
catctgaggagtactctacgaaggcttaaaaccttgatttctcttccaaaaagagttgggatgatcctgcacagaatgtgtgt |
506 |
Q |
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| T |
5267114 |
catctgaggagtactctacgaaggcttaaaaccttgatttctcttccaaaaagagttgggatgatcctgcacagagtgtgtgt |
5267032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 156
Target Start/End: Complemental strand, 34536502 - 34536423
Alignment:
| Q |
76 |
tttccatttcttcaaatctctcaacaagtaactataaaaagaggtcatgcctttaagcataacatgatgcttaaaccaaat |
156 |
Q |
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|||| |||||| || ||||| |||||||| ||||| ||||||||||||| ||||||||| ||||||| || |||||||| |
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| T |
34536502 |
tttctatttctccatatctcgcaacaagtgactatgaaaagaggtcatg-tgttaagcatagcatgatgtttgaaccaaat |
34536423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 166
Target Start/End: Original strand, 55883578 - 55883653
Alignment:
| Q |
90 |
aatctctcaacaagtaactataaaaagaggtcatgcctttaagcataacatgatgcttaaaccaaatttcacaatca |
166 |
Q |
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| T |
55883578 |
aatctcccaacaagtaactacgaaaagaggtcatg-tgttaagcataacatgatgtttgaatcaaatttgacaatca |
55883653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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