View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16058_low_31 (Length: 232)
Name: NF16058_low_31
Description: NF16058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16058_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 33317515 - 33317294
Alignment:
| Q |
1 |
caaacaatgccaacaaacagaatagtctaccacacaggtaaacatggcttgactttcaatttcataataccatgaatgaaatcaataatgtaatgattgt |
100 |
Q |
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| T |
33317515 |
caaacaatgccaacaaacagaatagtctaccacacaggtaaacatggcttgactttcaatttcataataccatgaatcaaatcaataatgtaatgattgt |
33317416 |
T |
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| Q |
101 |
tcgctgaaaaataggatctgaagcatatgatagtgttaaaatctataattagtaactcgaagctcaatctattttaatattatcatactttcttatgcaa |
200 |
Q |
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| T |
33317415 |
tcgctgaaaaataggatctgaagcatatgatagtgttaaaatctataattagtaactcaaagctcaatctattttaatattatcatactttcttatgcaa |
33317316 |
T |
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| Q |
201 |
aaagaaagaaattgtttctctg |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
33317315 |
aaagaaagaaattgtttctctg |
33317294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 52 - 149
Target Start/End: Complemental strand, 6184774 - 6184677
Alignment:
| Q |
52 |
actttcaatttcataataccatgaatgaaatcaataatgtaatgattgttcgctgaaaaataggatctgaagcatatgatagtgttaaaatctataat |
149 |
Q |
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| T |
6184774 |
actttcaatttcataatactatgaattatatcaataatacaaagtttatttgctaaataataagatctgaagcatttgatagtgttaagatctataat |
6184677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 6373079 - 6373039
Alignment:
| Q |
110 |
aataggatctgaagcatatgatagtgttaaaatctataatt |
150 |
Q |
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|||| |||||||||||| | ||||||||||||||||||||| |
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| T |
6373079 |
aataagatctgaagcatttcatagtgttaaaatctataatt |
6373039 |
T |
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