View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16058_low_33 (Length: 226)
Name: NF16058_low_33
Description: NF16058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16058_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 1061298 - 1061490
Alignment:
| Q |
14 |
aaaatcaaaacagaaaatcatttatcatttttgcaagtggttgaatgagaaatacaaaatgtatccaaaaagagnnnnnnnnnnncaaaattaacaaata |
113 |
Q |
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|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1061298 |
aaaatcaaaacagaaaatcatttatcgttattgcaagtggttgaatgagaaatacaaaatgtatccaaaaagagaaaaaa------aaaattaacaaata |
1061391 |
T |
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| Q |
114 |
acctttgaagagatctgaatgaaaataaaagaagcttctgattgtaactccggcgccgcggaagcgaattccggtgcgctggtcactggtgaagtttct |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1061392 |
acctttgaagagatctgaatgaaaataaaagaagcttctgattgtaactccggcgccgcggaagcgaattccggtgcgctggtcactggcgaagtttct |
1061490 |
T |
|
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Target: chr5 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 34025124 - 34024919
Alignment:
| Q |
14 |
aaaatcaaaacagaaaatcatttatcatttttgcaagtggttgaatgagaaatacaaaatgtatccaaaaagagnnnnnnnnnnn-------caaaatta |
106 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34025124 |
aaaatcaaaacagaaaatcatttatcattattgcaagtggttgaatgagaaatacaaaatgtatccaaaaagagaaaaaaaaaaaaaacaaacaaaatta |
34025025 |
T |
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| Q |
107 |
acaaataacctttgaagagatctgaatgaaaataaaagaagcttctgattgtaactccggcgccgcggaagcgaattccggtgcgctggtcactggtgaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
34025024 |
acaaataacctttgaagagatctgaatgaaaataaaagaagcttctgattgtaactccggcgccgcggaagcgaattccggtgcgctggtcactggcgaa |
34024925 |
T |
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| Q |
207 |
gtttct |
212 |
Q |
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|||||| |
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| T |
34024924 |
gtttct |
34024919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 14936496 - 14936304
Alignment:
| Q |
14 |
aaaatcaaaacagaaaatcatttatcatttttgcaagtggttgaatgagaaatacaaaatgtatccaaaaagagnnnnnnnnnnncaaaattaacaaata |
113 |
Q |
| |
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|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
14936496 |
aaaatcaaaacagaaaatcatttatcgttattgcaagtggttgaatgagaaatacaaaatgtatccaaaaagagaaaaaa------aaaattaacaaata |
14936403 |
T |
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| Q |
114 |
acctttgaagagatctgaatgaaaataaaagaagcttctgattgtaactccggcgccgcggaagcgaattccggtgcgctggtcactggtgaagtttct |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||| |
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| T |
14936402 |
acctttgaagagatctgaatgaaaataaaagaagcttctgattgtaactccggcgcggcggaagcgaattccggtgctgtggtcaccggtgaagtttct |
14936304 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 34977905 - 34977706
Alignment:
| Q |
14 |
aaaatcaaaacagaaaatcatttatcatttttgcaagtggttgaatgagaaatacaaaatgtatccaaaaagagnnnnnnnnnnncaaaa-ttaacaaat |
112 |
Q |
| |
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|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
34977905 |
aaaatcaaaacagaaaatcatttatcgttattgcaagtggttgaatgagaaatacaaaatgtatccaaaaagagaaaaaaaaaaaaaaaaattaacaaat |
34977806 |
T |
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| Q |
113 |
aacctttgaagagatctgaatgaaaataaaagaagcttctgattgtaactccggcgccgcggaagcgaattccggtgcgctggtcactggtgaagtttct |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||| |||||||||||| |
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| T |
34977805 |
aacctttgaagagatctgaatgaaaataaaagaagcttctgattgtaactccggcgcggcggaagcgaattccgatgctatggtcaccggtgaagtttct |
34977706 |
T |
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