View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16058_low_36 (Length: 221)
Name: NF16058_low_36
Description: NF16058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16058_low_36 |
 | |
|
| [»] scaffold0102 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 5347970 - 5348167
Alignment:
| Q |
17 |
atcatcatcaacatcacacactttctaatgattctc--tctctcttgtttgttaccttcttcaattaatcaacaacaacccttcggaattcatcaacaat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5347970 |
atcatcatcaacatcacacactttctaatgattctctctctctcttgtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaac |
5348069 |
T |
|
| Q |
115 |
agaaagaataacagaaaagatcatgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcatctca |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5348070 |
agaaagaataacagaaaagatcatgaacttgttggaaaaagaacaagggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctca |
5348167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 36429538 - 36429733
Alignment:
| Q |
17 |
atcatcatcaacatcacacactttctaatgattctctctctcttgtttgttaccttcttcaattaatcaacaacaacccttcggaattcatcaacaatag |
116 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||| | |
|
|
| T |
36429538 |
atcatcattaacatcacacactttataatgattctctctctcttgtttgttaccttcttgaattaatcaacaacaaccttttggaattcatcaacaacaa |
36429637 |
T |
|
| Q |
117 |
aaagaataacagaaaagatcatgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcatctca |
212 |
Q |
| |
|
|| |||||| ||||||||||||||||||||| |||||||||||| | ||||||||||||||||| ||| ||||||||||| ||||| ||| ||||| |
|
|
| T |
36429638 |
aatgaataatagaaaagatcatgaacttgtttgaaaaagaacaaggtttatgatgaatagcatggacaacaacatcaacagcaacggttcttctca |
36429733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 26380046 - 26380115
Alignment:
| Q |
115 |
agaaagaataacagaaaagatcatgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaaca |
184 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||| |||| |
|
|
| T |
26380046 |
agaatgaataacagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaaca |
26380115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 163; Significance: 3e-87; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 15347679 - 15347876
Alignment:
| Q |
17 |
atcatcatcaacatcacacactttctaatgattctc--tctctcttgtttgttaccttcttcaattaatcaacaacaacccttcggaattcatcaacaat |
114 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
15347679 |
atcatcatcaacatcgcacactttctaatgattctctctctctcttgtttgttaccttcttaaattaatcaacaacaaccctttggaattcatcaacaac |
15347778 |
T |
|
| Q |
115 |
agaaagaataacagaaaagatcatgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcatctca |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15347779 |
agaaagaataacagaaaagatcatgaacttgttggaaaaagaacaagggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctca |
15347876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 17 - 212
Target Start/End: Complemental strand, 17732689 - 17732490
Alignment:
| Q |
17 |
atcatcatcaacatcacacactttctaatgattctctctctct----tgtttgttaccttcttcaattaatcaacaacaacccttcggaattcatcaaca |
112 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
17732689 |
atcatcatcaacctcacacactttctaatgattctctctctctctcttgtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaaca |
17732590 |
T |
|
| Q |
113 |
atagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcatctca |
212 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
17732589 |
acagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaagggttatgatgaatagcatgaacaccaacatcaacagcaacgtttcttctca |
17732490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 17 - 212
Target Start/End: Complemental strand, 6009304 - 6009103
Alignment:
| Q |
17 |
atcatcatcaacatcacacactttctaatgattctctctctct------tgtttgttaccttcttcaattaatcaacaacaacccttcggaattcatcaa |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
6009304 |
atcatcatcaacatcacacactttctaatgattctctctctctctctcttgtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaa |
6009205 |
T |
|
| Q |
111 |
caatagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcatct |
210 |
Q |
| |
|
||| | || ||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
6009204 |
caacaaaatgaataacagaaaagatcgtggacttgttggaaaaagaacaagggttatgatgaatagcatgaacaccaacatcaacatcaatgtttcttct |
6009105 |
T |
|
| Q |
211 |
ca |
212 |
Q |
| |
|
|| |
|
|
| T |
6009104 |
ca |
6009103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 30709745 - 30709944
Alignment:
| Q |
17 |
atcatcatcaacatcacacactttctaatgattctc----tctctcttgtttgttaccttcttcaattaatcaacaacaacccttcggaattcatcaaca |
112 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30709745 |
atcatcatcaacatcacacactttataatgattctctctctctctcttgtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaaca |
30709844 |
T |
|
| Q |
113 |
atagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcatctca |
212 |
Q |
| |
|
| | || |||||| ||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||| ||||||||||| ||||| ||| ||||| |
|
|
| T |
30709845 |
acaaaatgaataatagaaaagatcatgaacttgtttgaaaaagaacaaggtttatgatgaatagcatgaacaacaacatcaacagcaacggttcttctca |
30709944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 54560280 - 54560477
Alignment:
| Q |
17 |
atcatcatcaacatcacacactttctaatgattctc--tctctcttgtttgttaccttcttcaattaatcaacaacaacccttcggaattcatcaacaat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
54560280 |
atcatcatcaacatcacacactttctaatgattctctctctctcttgtttgttaccttcttgaattaatcaactacaaccctttggaattcatcaacaac |
54560379 |
T |
|
| Q |
115 |
agaaagaataacagaaaagatcatgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcatctca |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
54560380 |
agaaagaataacagaaaagatcatgaacttgttggaaaaagaacaagggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctca |
54560477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 17 - 212
Target Start/End: Complemental strand, 50838130 - 50837933
Alignment:
| Q |
17 |
atcatcatcaacatcacacactttctaatgattctctctctct--tgtttgttaccttcttcaattaatcaacaacaacccttcggaattcatcaacaat |
114 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
50838130 |
atcatcatcaacctcacacactttctaatgattctctctctctcttgtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaac |
50838031 |
T |
|
| Q |
115 |
agaaagaataacagaaaagatcatgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcatctca |
212 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
50838030 |
agaatgaataacagaaaagatcatgaacttgttggaaaaagaacaagggttatgatgaatagcatgaacaccaacatcaacagcaacgtttcttctca |
50837933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 47470950 - 47471144
Alignment:
| Q |
17 |
atcatcatcaacatcacacactttctaatgattctctctctcttgtttgttaccttcttcaattaatcaacaacaacccttcggaattcatcaacaatag |
116 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||| | |
|
|
| T |
47470950 |
atcatcatcaacatcacacactttataatgattctctctctcttgtttgttaccttcttgaattaatcaacaacaaccctttggaa-tcatcaacaacaa |
47471048 |
T |
|
| Q |
117 |
aaagaataacagaaaagatcatgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcatctca |
212 |
Q |
| |
|
|| |||||| |||||||||||||||||||||||||||||||||| | |||| |||||||||||||||| ||||||||||||||||| ||| ||||| |
|
|
| T |
47471049 |
aatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttataatgaatagcatgaacaacaacatcaacatcaacggttcttctca |
47471144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 4592874 - 4593052
Alignment:
| Q |
17 |
atcatcatcaacatcacacactttctaatgattctctctctcttgtttgttaccttcttcaattaatcaacaacaacccttcggaattcatcaacaatag |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
4592874 |
atcatcatcaacatcacacactttctaatgattctctctctcttgtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacag |
4592973 |
T |
|
| Q |
117 |
aaagaataacagaaaagatcatgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaacaccaacatcaac |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4592974 |
aaagaataacagaaaagatcatgaacttgttggaaaaagaacaagggttatgatgaatagcatgaacaccaacatcaac |
4593052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 77 - 212
Target Start/End: Original strand, 10256013 - 10256148
Alignment:
| Q |
77 |
aattaatcaacaacaacccttcggaattcatcaacaatagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaaaggttatgatgaatag |
176 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||| | || |||||| |||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
10256013 |
aattcatcaacaacaaccctttggaattcatcaacaacaaaatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaatag |
10256112 |
T |
|
| Q |
177 |
catgaacaccaacatcaacatcaacgtttcatctca |
212 |
Q |
| |
|
|||||||| ||||||||||| ||||| ||| ||||| |
|
|
| T |
10256113 |
catgaacaacaacatcaacagcaacggttcttctca |
10256148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 10255925 - 10256025
Alignment:
| Q |
17 |
atcatcatcaacatcacacactttctaatgattctc----tctctcttgtttgttaccttcttcaattaatcaacaacaacccttcggaattcatcaaca |
112 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10255925 |
atcatcatcaacatcacacactttataatgattctctctctctctcttgtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaaca |
10256024 |
T |
|
| Q |
113 |
a |
113 |
Q |
| |
|
| |
|
|
| T |
10256025 |
a |
10256025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 159; Significance: 8e-85; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 14790920 - 14791121
Alignment:
| Q |
17 |
atcatcatcaacatcacacactttctaatgatt------ctctctctcttgtttgttaccttcttcaattaatcaacaacaacccttcggaattcatcaa |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
14790920 |
atcatcatcaacatcacacactttctaatgattatctctctctctctcttgtttgttaccttcttcaattaatcaacaacaaccctttggaattcatcaa |
14791019 |
T |
|
| Q |
111 |
caatagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcatct |
210 |
Q |
| |
|
||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
14791020 |
caacagaaagaataacagaaaatatcatgaacttgttggaaaaagaacaagggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttct |
14791119 |
T |
|
| Q |
211 |
ca |
212 |
Q |
| |
|
|| |
|
|
| T |
14791120 |
ca |
14791121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 17 - 212
Target Start/End: Complemental strand, 20112154 - 20111960
Alignment:
| Q |
17 |
atcatcatcaacatcacacactttctaatgattctctctctcttgtttgttaccttcttcaattaatcaacaacaacccttcggaattcatcaacaatag |
116 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||| |||||||| ||||||||||||||| | |
|
|
| T |
20112154 |
atcatcatcaacatcacacactttataatgattctctctct--tgtttgttaccttcttgaattaatcaacagcaaccctttggaattcatcaacaacaa |
20112057 |
T |
|
| Q |
117 |
aaagaataacagaaaagatcatgaacttgttggaaaaagaacaaag-gttatgatgaatagcatgaacaccaacatcaacatcaacgtttcatctca |
212 |
Q |
| |
|
|| |||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||| ||||| ||| ||||| |
|
|
| T |
20112056 |
aatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggttttatgatgaatagcatgaacaacaacatcaacaacaacggttcttctca |
20111960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 104
Target Start/End: Original strand, 18308842 - 18308911
Alignment:
| Q |
33 |
cacactttctaatgattctctctctcttgtttgttaccttcttcaattaatcaacaacaacccttcggaatt |
104 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||| |||| ||||||||||||||||| ||| |||||| |
|
|
| T |
18308842 |
cacactttttaatgattctc--tctcttgtttgttaccatcttgaattaatcaacaacaactctttggaatt |
18308911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0102 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: scaffold0102
Description:
Target: scaffold0102; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 32608 - 32803
Alignment:
| Q |
17 |
atcatcatcaacatcacacactttctaatgattctctctctcttgtttgttaccttcttcaattaatcaacaacaacccttcggaattcatcaacaatag |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||| || |
|
|
| T |
32608 |
atcatcatcaacatcacacactttctaatgattctctctctcttgtttgttaccttcttgaattaatcaacaacaaccctttgaaattcatcaacaacag |
32707 |
T |
|
| Q |
117 |
aaagaataacagaaaagatcatgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcatctca |
212 |
Q |
| |
|
|| |||||| |||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||| ||||| ||| ||||| |
|
|
| T |
32708 |
aatgaataatagaaaatatcatgaacttgttggaaaaagaacaaggtttatgatgaatagcatgaacaacaacatcaacagcaacggttcttctca |
32803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 17 - 212
Target Start/End: Complemental strand, 47445651 - 47445456
Alignment:
| Q |
17 |
atcatcatcaacatcacacactttctaatgattctctctctcttgtttgttaccttcttcaattaatcaacaacaacccttcggaattcatcaacaatag |
116 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
47445651 |
atcatcatcaacatcacacattttctaatgattctctctctcttgtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacag |
47445552 |
T |
|
| Q |
117 |
aaagaataacagaaaagatcatgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcatctca |
212 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||||||||||||||| | |||| |||||||||||||||| ||||||||||| ||||| ||| ||||| |
|
|
| T |
47445551 |
aatgaataacagaaaaaatcatgaacttgttggaaaaagaacaaggtttataatgaatagcatgaacaacaacatcaacagcaacggttcttctca |
47445456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 27455174 - 27455371
Alignment:
| Q |
17 |
atcatcatcaacatcacacactttctaatgattctc--tctctcttgtttgttaccttcttcaattaatcaacaacaacccttcggaattcatcaacaat |
114 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
27455174 |
atcatcatcaacatcacacactttataatgattctctctctctcttgtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaac |
27455273 |
T |
|
| Q |
115 |
agaaagaataacagaaaagatcatgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcatctca |
212 |
Q |
| |
|
| || |||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||| ||||| ||| ||||| |
|
|
| T |
27455274 |
aaaatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaatagcatgaacaacaacatcaacaacaacggttcttctca |
27455371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 100 - 212
Target Start/End: Complemental strand, 49681850 - 49681738
Alignment:
| Q |
100 |
gaattcatcaacaatagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaacaccaacatcaacatca |
199 |
Q |
| |
|
|||||||||||||| | || |||||||| ||||||||||||| |||||||||||||||||| | ||||||||||||||||||||| ||||||||||| || |
|
|
| T |
49681850 |
gaattcatcaacaacataatgaataacataaaagatcatgaaattgttggaaaaagaacaacgtttatgatgaatagcatgaacaacaacatcaacaaca |
49681751 |
T |
|
| Q |
200 |
acgtttcatctca |
212 |
Q |
| |
|
||| ||| ||||| |
|
|
| T |
49681750 |
acgattcttctca |
49681738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 49681909 - 49681835
Alignment:
| Q |
17 |
atcatcatcaacatcacacactttctaatgattctctctctcttgtttgttaccttcttcaattaatcaacaaca |
91 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
49681909 |
atcatcatcaacatcacacactttctaatgattctctctctcttgtttgttaccttcttgaattcatcaacaaca |
49681835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 49 - 196
Target Start/End: Original strand, 36067603 - 36067750
Alignment:
| Q |
49 |
tctctctctcttgtttgttaccttcttcaattaatcaacaacaacccttcggaattcatcaacaatagaaagaataacagaaaagatcatgaacttgttg |
148 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
36067603 |
tctctctctcttgtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttg |
36067702 |
T |
|
| Q |
149 |
gaaaaagaacaaaggttatgatgaatagcatgaacaccaacatcaaca |
196 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||| ||||||||||| |
|
|
| T |
36067703 |
gaaaaagaacaaggtttatgatgaatagcatgaacaacaacatcaaca |
36067750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University