View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16058_low_39 (Length: 202)
Name: NF16058_low_39
Description: NF16058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16058_low_39 |
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| [»] scaffold0370 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 137; Significance: 9e-72; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 9e-72
Query Start/End: Original strand, 13 - 181
Target Start/End: Original strand, 38633134 - 38633302
Alignment:
| Q |
13 |
tagattatactatcttcaaaaggatcggagaaaccgcgtggcgagtaaagagaagatacttatggatttatatatggctcttgatgaattgaatttcatg |
112 |
Q |
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| T |
38633134 |
tagattacactatctacaaaaggaacggagaaaccgcgtggcgagtaaggagaagatacttagggatttatatatggctcttgatgagttgaatttcatg |
38633233 |
T |
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| Q |
113 |
aacaaagcatcaaagggaggacggtttggggaaaagcctgataaaaatgttagaaaaatacaggtattt |
181 |
Q |
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| T |
38633234 |
aacaaagcatcaaagggaggacggtttggggaaaagcctgataaaaatgttagaaaaatatagctattt |
38633302 |
T |
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Target: chr2; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 76 - 181
Target Start/End: Original strand, 38637182 - 38637287
Alignment:
| Q |
76 |
ggatttatatatggctcttgatgaattgaatttcatgaacaaagcatcaaagggaggacggtttggggaaaagcctgataaaaatgttagaaaaatacag |
175 |
Q |
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| T |
38637182 |
ggatttgtatatgactcttgatcaattgaatttcataaacaaagtagcaaatggagaatggttcggggaaaagcttgataaaaatgtaagaaaaataaag |
38637281 |
T |
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| Q |
176 |
gtattt |
181 |
Q |
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||||| |
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| T |
38637282 |
ctattt |
38637287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0370 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0370
Description:
Target: scaffold0370; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 12138 - 12206
Alignment:
| Q |
38 |
cggagaaaccgcgtggcgagtaaagagaagatacttatggatttatatatggctcttgatgaattgaat |
106 |
Q |
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| T |
12138 |
cggagaaacagtgtggcgattaaagggaaaatactaagggattttaatatggctcttgatgaattgaat |
12206 |
T |
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