View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16058_low_4 (Length: 505)
Name: NF16058_low_4
Description: NF16058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16058_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 460; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 5 - 488
Target Start/End: Original strand, 38696416 - 38696899
Alignment:
| Q |
5 |
ataattatggagaaacacttctgttctttctttcatacaatttgaagaggtcaactggataataagtcatcaaacaaccaaatctgtaaggagtaaattt |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38696416 |
ataattatggagaaacacttctgttctttctttcatacaatttgaagaggtcaactggataataagtcatcaaacaaccaaatctgtaaggagtaaattt |
38696515 |
T |
|
| Q |
105 |
tgaaaggatccaacagacataattcaaagagtagtaattcactactttttcacgttttattacacttgatttcacatatacacttgaattgataaagagt |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38696516 |
tgaaaggatccaacagacataattcaaagagtagtaattcactaccttttcacgttttattacacttgatttcacatatacacttgaattgataaagagt |
38696615 |
T |
|
| Q |
205 |
acaaacggtcacacacaaataaagaatgattacaaacaaaatcaatcataatatcaaagaattgataagaaaaagaaataaagtatacatctttgcattt |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
38696616 |
acaaacggtcacacacaaataaagaatgattacaaacaaaatcaatcataatatcaaagaatagataagaaaaagaaagaaagtatacatctttgcattt |
38696715 |
T |
|
| Q |
305 |
atggacaaacttttagaaagatcaagaaatatggcgcagttaaataaaattaacaacgctgcagtgctccctaatctcaccttgagaacctgtcaacaca |
404 |
Q |
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| T |
38696716 |
atggacaaacttttagaaagatcaagaaatatggtgcagttaaataaaattaacaacgctgcagtactccctaatctcaccttgagaacctgtcaacaca |
38696815 |
T |
|
| Q |
405 |
tccaagttacccatatgcaccattgccttggcaaacttcacattccagattgcagcatgtctggcattttttaacaccattctc |
488 |
Q |
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| T |
38696816 |
tccaagttacccatatgtaccattgccttggcaaacttcacattccagattgcagcatgtctggcattttttaacaccattctc |
38696899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 137 - 488
Target Start/End: Complemental strand, 38629706 - 38629361
Alignment:
| Q |
137 |
agtaattcactactttttcacgttttattacacttgatttcacatatacacttgaattgataaagagtacaaacggtcacacacaaataaagaatgatta |
236 |
Q |
| |
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|||||||||||| ||||| ||| ||||||||| |||| ||||||||| ||||||||||| ||||||| || |||| ||||||||||||||||||||| |
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| T |
38629706 |
agtaattcacta---tttcatgttctattacactggattgcacatatacccttgaattgatgaagagtataagcggtaacacacaaataaagaatgattc |
38629610 |
T |
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| Q |
237 |
caaacaaaatcaatcataatatcaaagaattgataagaaaaagaaataaagtatacatctttgcatttatggacaaacttttagaaagatcaagaaatat |
336 |
Q |
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| T |
38629609 |
taaacaaaa-caataaaagtatcaaagaattgatga-aaaaagaaagaaagc-tac--ctttgaatctatgaacaaattatctgaa-gatcaagaagg-t |
38629517 |
T |
|
| Q |
337 |
ggcgcagttaa--ataa--aattaacaacgctgcagtgctccctaatctcaccttgagaacctgtcaacacatccaagttacccatatgcaccattgcct |
432 |
Q |
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| |||||||| |||| ||||||||||||| || |||||||||||||||||| ||||||||||| |||||| ||| ||||||||||||||| || | |
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| T |
38629516 |
gctgcagttaattataattaattaacaacgctacaacgctccctaatctcaccttcagaacctgtcagcacatctaaggaacccatatgcaccatggctt |
38629417 |
T |
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| Q |
433 |
tggcaaacttcacattccagattgcagcatgtctggcattttttaacaccattctc |
488 |
Q |
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| T |
38629416 |
tggcaaacttcacattccagattgcagcatgtctagcattttttaacaccattctc |
38629361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 304 - 394
Target Start/End: Complemental strand, 20516817 - 20516727
Alignment:
| Q |
304 |
tatggacaaacttttagaaagatcaagaaatatggcgcagttaaataaaattaacaacgctgcagtgctccctaatctcaccttgagaacc |
394 |
Q |
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| T |
20516817 |
tatggacaaactttttggaaggtgaagaaatgtggtgcagttaattgaaattaacaacactgcagtgttccctaatctcaccttgagaacc |
20516727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 413 - 488
Target Start/End: Complemental strand, 8234727 - 8234650
Alignment:
| Q |
413 |
acccatatgcaccattgccttggcaaacttcacattccag--attgcagcatgtctggcattttttaacaccattctc |
488 |
Q |
| |
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||||||||||||||| || ||||||||||| || |||||| ||||||||||||||| | ||||||||||||||||| |
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| T |
8234727 |
acccatatgcaccatagctttggcaaactttactttccagaaattgcagcatgtctgaaagtttttaacaccattctc |
8234650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 413 - 488
Target Start/End: Original strand, 13404466 - 13404543
Alignment:
| Q |
413 |
acccatatgcaccattgccttggcaaacttcacattcc--agattgcagcatgtctggcattttttaacaccattctc |
488 |
Q |
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||||||||||||||| || ||||||||||| || |||| |||||||||| ||||| | ||||||||||||||||| |
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| T |
13404466 |
acccatatgcaccatagctttggcaaactttactttccagagattgcagctagtctgaaagtttttaacaccattctc |
13404543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 413 - 488
Target Start/End: Original strand, 36981611 - 36981688
Alignment:
| Q |
413 |
acccatatgcaccattgccttggcaaacttcacattccaga--ttgcagcatgtctggcattttttaacaccattctc |
488 |
Q |
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||||||||||||| | || ||||||||||| || ||||||| ||| ||| |||||| ||||||||||||||||||| |
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| T |
36981611 |
acccatatgcaccttggctttggcaaactttactttccagagattgtagcgtgtctgaaattttttaacaccattctc |
36981688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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