View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16058_low_8 (Length: 493)
Name: NF16058_low_8
Description: NF16058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16058_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 2 - 475
Target Start/End: Complemental strand, 7908705 - 7908232
Alignment:
| Q |
2 |
cagtatttttaacttttgactcagtcgaaagacttttagcatttagtgtgacctacaaaaatgaaagcatgaaatcacatcatgatttggtaacagaatc |
101 |
Q |
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| T |
7908705 |
cagtatttttaacttttaactcagtcgaaagacttttagcatttagtgtgacctacaaaaatgaaagcatgaaatcacatcatgatttggtaacagaatc |
7908606 |
T |
|
| Q |
102 |
gtaatctagtagtattgaaaatgtgagttgtgcttgaagaaaacaagtccttgacaaccttatataaagcatgaaagctgaaatcccacatagcacgact |
201 |
Q |
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| T |
7908605 |
gtaatctagtagtattgaaaaagtgagttgtgcttgaagaaaacaagtccttgacaaccttatataaagcatgaaagctgaaatcccacatagcacgact |
7908506 |
T |
|
| Q |
202 |
atacgtatcatccttcagttccagagttacaacaggatttccctcgacattctcagaatcaccaacagtccaatccaaattccttgcaaacccatgctgt |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7908505 |
atacgtatcatccttcagttccagagttacaacaggatttccctcgacattctcagaatcaccaacagtccaatccaaattccttgcaaacccatgctgt |
7908406 |
T |
|
| Q |
302 |
cgaaaactcaaccaaacaaacattttaacaagtcatcacagtaaattactcttaattttcagtcaaagagaagcaacttttatcaaccaaatattaagca |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7908405 |
cgaaaactcaaccaaacaaacattttaacaagtcatcacagtaaattactcttaattttcagtcaaagagaagcaacttttatcaaccaaatattaagca |
7908306 |
T |
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| Q |
402 |
caaaagttgcaatcactattttcactaagctacatagaatagcatgtatatagccgtcataccaaaaccaatta |
475 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7908305 |
caaaagttgcaatcactattttcactaagctacataaaatagcatgtatatagccgtcataccaaaaccaatta |
7908232 |
T |
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