View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16058_low_9 (Length: 450)
Name: NF16058_low_9
Description: NF16058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16058_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 11 - 437
Target Start/End: Complemental strand, 43082316 - 43081890
Alignment:
| Q |
11 |
cagagacgacttagggtgtgtgaaaagtgctaatgacctaagcaacaatcacaaccttatgctgcaagctagattacaagaattcaggaaacagtatcca |
110 |
Q |
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| T |
43082316 |
cagagacgacttagggtgtgtgaaaagtgctaatgacctaagcaacaatcacaaccttatgctgcaagctagattacaagaattcaggaaacagtatcca |
43082217 |
T |
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| Q |
111 |
catgcagtcatagtttatgctgattacttcaatgcctaccgtactgtgatgaagaatccaagcaagtatggattcaaagatgtgttcagtgtctgctgtg |
210 |
Q |
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| T |
43082216 |
catgcagtcatagtttatgctgattacttcaatgcctaccgtactgtgatgaagaatccaagcaagtatggattcaaagatttgttcagtgtctgctgtg |
43082117 |
T |
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| Q |
211 |
gatcaggagaacctccttacaacttcactgtgtttgaaacttgtggtacacctaatgctactgtctgcactagcccttctcagtatattaattgggatgg |
310 |
Q |
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| T |
43082116 |
gatcaggagaacctccttacaacttcactgtgtttgaaacttgtggtacacctaatgctactgtctgcactagcccttctcagtatattaattgggatgg |
43082017 |
T |
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| Q |
311 |
tgttcatcttacagaagctatgtataaggttgtttctaatatgtttcttcaaggaaattacagccaacctccatttgattttttgttagaaaacaaagag |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43082016 |
tgttcatcttacagaagctatgtataaggttgtttctaatatgtttcttcaaggaaattacagccaacctccatttgattttttgttagaaaacaaagag |
43081917 |
T |
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| Q |
411 |
agacatggctgaatgcatgatgatggt |
437 |
Q |
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| T |
43081916 |
agacatggctgaatgcatgatgatggt |
43081890 |
T |
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