View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16059_high_1 (Length: 758)

Name: NF16059_high_1
Description: NF16059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16059_high_1
NF16059_high_1
[»] chr5 (16 HSPs)
chr5 (15-580)||(41609506-41610074)
chr5 (454-577)||(14098350-14098473)
chr5 (451-576)||(210371-210496)
chr5 (661-750)||(31552808-31552897)
chr5 (472-552)||(33573281-33573361)
chr5 (472-575)||(4084710-4084813)
chr5 (662-750)||(16987413-16987501)
chr5 (527-577)||(29630393-29630442)
chr5 (451-556)||(10951307-10951412)
chr5 (102-170)||(18862304-18862371)
chr5 (540-579)||(14098305-14098344)
chr5 (509-579)||(26015501-26015571)
chr5 (533-575)||(19119679-19119720)
chr5 (518-556)||(24180742-24180780)
chr5 (479-548)||(4427902-4427971)
chr5 (515-556)||(24180018-24180059)
[»] chr3 (19 HSPs)
chr3 (15-580)||(49308129-49308693)
chr3 (337-514)||(26250201-26250378)
chr3 (603-750)||(10973022-10973169)
chr3 (451-580)||(53467210-53467339)
chr3 (459-577)||(37915410-37915528)
chr3 (451-580)||(1093172-1093300)
chr3 (451-580)||(50704275-50704396)
chr3 (529-580)||(49308833-49308884)
chr3 (506-580)||(50703742-50703816)
chr3 (471-556)||(46889349-46889434)
chr3 (478-552)||(20111849-20111923)
chr3 (472-555)||(36863910-36863992)
chr3 (506-579)||(46915796-46915868)
chr3 (535-580)||(55337591-55337635)
chr3 (546-577)||(51149164-51149195)
chr3 (545-580)||(55336838-55336873)
chr3 (526-580)||(18387646-18387699)
chr3 (535-580)||(25080815-25080859)
chr3 (535-580)||(25081550-25081594)
[»] scaffold0021 (1 HSPs)
scaffold0021 (599-750)||(120472-120623)
[»] chr8 (3 HSPs)
chr8 (458-580)||(20105000-20105122)
chr8 (489-552)||(44495085-44495148)
chr8 (102-170)||(25230032-25230099)
[»] chr4 (11 HSPs)
chr4 (451-580)||(51702666-51702795)
chr4 (451-580)||(24844084-24844213)
chr4 (459-579)||(49648163-49648283)
chr4 (451-577)||(33114086-33114215)
chr4 (452-576)||(49479909-49480031)
chr4 (472-577)||(11380933-11381037)
chr4 (472-552)||(50185306-50185386)
chr4 (451-511)||(50848409-50848469)
chr4 (451-524)||(12920401-12920474)
chr4 (470-549)||(5941321-5941400)
chr4 (518-556)||(52255425-52255463)
[»] chr7 (15 HSPs)
chr7 (451-578)||(32577294-32577420)
chr7 (451-577)||(9146066-9146192)
chr7 (458-577)||(12294201-12294320)
chr7 (471-580)||(42745633-42745742)
chr7 (478-580)||(12293465-12293567)
chr7 (472-552)||(42418161-42418241)
chr7 (534-579)||(7831633-7831678)
chr7 (506-580)||(41115465-41115538)
chr7 (484-550)||(32576627-32576692)
chr7 (506-577)||(18977844-18977914)
chr7 (533-575)||(32949844-32949885)
chr7 (506-580)||(44545238-44545311)
chr7 (533-578)||(7832382-7832426)
chr7 (535-568)||(13784053-13784086)
chr7 (666-739)||(27846114-27846187)
[»] scaffold0136 (1 HSPs)
scaffold0136 (451-577)||(23650-23776)
[»] chr2 (11 HSPs)
chr2 (459-578)||(42847933-42848052)
chr2 (470-578)||(45632361-45632468)
chr2 (451-543)||(1678296-1678388)
chr2 (470-579)||(42848595-42848704)
chr2 (487-580)||(1677569-1677662)
chr2 (451-552)||(30266349-30266450)
chr2 (600-658)||(74379-74437)
chr2 (506-580)||(44356814-44356887)
chr2 (475-552)||(25616878-25616955)
chr2 (506-577)||(44357569-44357639)
chr2 (472-566)||(28682429-28682522)
[»] chr1 (7 HSPs)
chr1 (467-552)||(23732875-23732960)
chr1 (472-577)||(51097517-51097621)
chr1 (472-580)||(19534719-19534826)
chr1 (534-580)||(36930179-36930225)
chr1 (451-522)||(28763097-28763168)
chr1 (534-571)||(43250883-43250920)
chr1 (474-512)||(12644173-12644211)
[»] chr6 (5 HSPs)
chr6 (474-552)||(18970597-18970675)
chr6 (506-580)||(22046427-22046500)
chr6 (506-580)||(22058835-22058908)
chr6 (515-556)||(18242694-18242735)
chr6 (506-577)||(22047182-22047252)
[»] scaffold0154 (1 HSPs)
scaffold0154 (514-565)||(7469-7520)


Alignment Details
Target: chr5 (Bit Score: 522; Significance: 0; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 15 - 580
Target Start/End: Complemental strand, 41610074 - 41609506
Alignment:
Q  15 cacaactattaatttttaattttctttcacttgacatccttctttatctcgtgggtactattatcatagtaaaaaattgcatgt--gtgtctttttcttc 112  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||    
T  41610074 cacaactattaaattttaattttctttcacttgacatccttctttatctcgtgggtactattatcatagtaagaaattgcatgtttgtgtctttttcttc 41609975  T
Q  113 cacaattgctaaagtccttagaaacatccc-tttgattttctaggtttccctttcgttatcttctgtgcatatctaacaacctaaaattatcatatccaa 211  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41609974 cacaattgttaaagtccttagaaacatcccctttgattttctaggtttccctttcgttatcttctgtgcatatctaacaacctaaaattatcatatccaa 41609875  T
Q  212 gcaaataattatcaagtgcaattttataaaaactatgaaattcaaacaacagaactttctcatacaaaaatcccatgaatttatgccaacattaatttca 311  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  41609874 gcaaataattatcaagtgcaattttataaaaattatgaaattcaaacaacagaactttctcaaacaaaaatcccatgaatttatgccaacattaatttca 41609775  T
Q  312 tgggtaatccaccactgtttcgtaccaatatagtcatgtagcctttcaattttaatgattcaggcttaatcgaatttgaagaaaaagaggggaaaaactg 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  41609774 tgggtaatccaccactgtttcgtaccaatatagtcatgtagcctttcaattttaatgattgaggcttaatcgaatttgaagaaaaagaggggaaaaactg 41609675  T
Q  412 gaatcgtagcaggctatgaggataggggtgaccctttttaaaggtggaggttgtagtgcatgaccctttttaaagagcaattaaatctgaagcgttgatt 511  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  41609674 gaatcgtagcaggctatgaggataggggtgaccctttttaaaggtggaggttgtagtgcatgaccctttttaaagagcaattaaatctgatgcgttgatt 41609575  T
Q  512 ttgatccaatggttcaaattaattcctctcatcctctcattataactactcctctcacttgatatgccc 580  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41609574 ttgatccaatggttcaaattaattcctctcatcctctcattataactactcctctcacttgatatgccc 41609506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 454 - 577
Target Start/End: Original strand, 14098350 - 14098473
Alignment:
Q  454 ggtggaggttgtagtgcatgaccctttttaaagagcaattaaatctgaagcgttgattttgatccaatggttcaaattaattcctctcatcctctcatta 553  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||     
T  14098350 ggtggaggttgtagtgcatgaccctttttaaagagcaattaaatctgaagcgttgattttgttccaatggtccaaattaattcctgtcatcctctcattg 14098449  T
Q  554 taactactcctctcacttgatatg 577  Q
    ||||||||||||||||||||||||    
T  14098450 taactactcctctcacttgatatg 14098473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 451 - 576
Target Start/End: Original strand, 210371 - 210496
Alignment:
Q  451 aaaggtggaggttgtagtgcatgaccctttttaaagagcaattaaatctgaagcgttgattttgatccaatggttcaaattaattcctctcatcctctca 550  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||| |||||||||||    
T  210371 aaaggtagaggttgtagtgcatgaccctttttaaagagcaattaaatctaaagcgttgattttgatccaatggtccagattaattcctttcatcctctca 210470  T
Q  551 ttataactactcctctcacttgatat 576  Q
    || |||||||| |||||| |||||||    
T  210471 ttctaactacttctctcatttgatat 210496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 661 - 750
Target Start/End: Complemental strand, 31552897 - 31552808
Alignment:
Q  661 tgctgcccaacatggttggtctaacatatggttagaaagtgactcttccaatgcgcttcttgtgttcaaaaatttatcgttggtgcctat 750  Q
    ||||||||  ||||||||||| ||||||||||| |||||||||||||| | |||||||||||||||||||||| | || ||||| |||||    
T  31552897 tgctgcccttcatggttggtcaaacatatggttggaaagtgactcttctagtgcgcttcttgtgttcaaaaatctttcattggtacctat 31552808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 472 - 552
Target Start/End: Complemental strand, 33573361 - 33573281
Alignment:
Q  472 tgaccctttttaaagagcaattaaatctgaagcgttgattttgatccaatggttcaaattaattcctctcatcctctcatt 552  Q
    |||||||||| ||||| ||||||||||||| ||||||||||||||| || |||  |||||||||||||||| |||||||||    
T  33573361 tgacccttttgaaagaacaattaaatctgaggcgttgattttgatctaacggtctaaattaattcctctcagcctctcatt 33573281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 472 - 575
Target Start/End: Original strand, 4084710 - 4084813
Alignment:
Q  472 tgaccctttttaaagagcaattaaatctgaagcgttgattttgatccaatggttcaaattaattcctctcatcctctcattataactactcctctcactt 571  Q
    |||||||||||||||| ||||| ||||||| ||||| |||||||||| | ||| || |||| ||||||||| |||||||||||||    |||||||||||    
T  4084710 tgaccctttttaaagaacaatttaatctgaggcgtttattttgatccgacggtccacattatttcctctcaccctctcattataaaatgtcctctcactt 4084809  T
Q  572 gata 575  Q
    ||||    
T  4084810 gata 4084813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 662 - 750
Target Start/End: Original strand, 16987413 - 16987501
Alignment:
Q  662 gctgcccaacatggttggtctaacatatggttagaaagtgactcttccaatgcgcttcttgtgttcaaaaatttatcgttggtgcctat 750  Q
    |||||||| ||||||||| | ||||| ||||| |||||||||||||| | |||||||||||| || |||||||||||  ||||||||||    
T  16987413 gctgcccatcatggttggacaaacatttggttggaaagtgactcttctagtgcgcttcttgtttttaaaaatttatctgtggtgcctat 16987501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 527 - 577
Target Start/End: Complemental strand, 29630442 - 29630393
Alignment:
Q  527 aaattaattcctctcatcctctcattataactactcctctcacttgatatg 577  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29630442 aaattaattcctctcatc-tctcattataactactcctctcacttgatatg 29630393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 451 - 556
Target Start/End: Complemental strand, 10951412 - 10951307
Alignment:
Q  451 aaaggtggaggttgtagtgcatgaccctttttaaagagcaattaaatctgaagcgttgattttgatccaatggttcaaattaattcctctcatcctctca 550  Q
    ||||||| ||| ||||||   |||||||| ||||||| ||||| ||||||| |||||||||||||||| |  || || |||| ||||||||| |||||||    
T  10951412 aaaggtgtaggatgtagtatgtgacccttcttaaagaacaatttaatctgaggcgttgattttgatccgacagtccacattatttcctctcaccctctca 10951313  T
Q  551 ttataa 556  Q
    ||||||    
T  10951312 ttataa 10951307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 170
Target Start/End: Original strand, 18862304 - 18862371
Alignment:
Q  102 tctttttcttccacaattgctaaagtccttagaaacatccctttgattttctaggtttccctttcgtta 170  Q
    |||||||||| |||||||| | || |||||||||| | |||||||||||||||||||||| ||||||||    
T  18862304 tctttttctttcacaattgttcaa-tccttagaaaaacccctttgattttctaggtttccatttcgtta 18862371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 540 - 579
Target Start/End: Complemental strand, 14098344 - 14098305
Alignment:
Q  540 tcatcctctcattataactactcctctcacttgatatgcc 579  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  14098344 tcatcctctcattataactactcctctctcttgatatgcc 14098305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 509 - 579
Target Start/End: Complemental strand, 26015571 - 26015501
Alignment:
Q  509 attttgatccaatggttcaaattaattcctctcatcctctcattataactactcctctcacttgatatgcc 579  Q
    |||||||||||| || | | |||||||||||||| |||||||||  |  ||||||||||||||||||||||    
T  26015571 attttgatccaaaggatgatattaattcctctcaccctctcatttaagttactcctctcacttgatatgcc 26015501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 533 - 575
Target Start/End: Original strand, 19119679 - 19119720
Alignment:
Q  533 attcctctcatcctctcattataactactcctctcacttgata 575  Q
    ||||||||||||||||||||||||| |||||||||| ||||||    
T  19119679 attcctctcatcctctcattataac-actcctctcatttgata 19119720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 518 - 556
Target Start/End: Original strand, 24180742 - 24180780
Alignment:
Q  518 caatggttcaaattaattcctctcatcctctcattataa 556  Q
    |||||||| | ||||||||||||||||||||||||||||    
T  24180742 caatggttaatattaattcctctcatcctctcattataa 24180780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 479 - 548
Target Start/End: Complemental strand, 4427971 - 4427902
Alignment:
Q  479 ttttaaagagcaattaaatctgaagcgttgattttgatccaatggttcaaattaattcctctcatcctct 548  Q
    ||||||||||||||||||| | ||| || ||||| ||| ||| |||  |||||||||||||||| |||||    
T  4427971 ttttaaagagcaattaaatttaaagtgtcgatttagattcaacggtctaaattaattcctctcaccctct 4427902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 515 - 556
Target Start/End: Complemental strand, 24180059 - 24180018
Alignment:
Q  515 atccaatggttcaaattaattcctctcatcctctcattataa 556  Q
    ||||||||||| | || |||||||||||||||||||||||||    
T  24180059 atccaatggttaatatcaattcctctcatcctctcattataa 24180018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 512; Significance: 0; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 15 - 580
Target Start/End: Complemental strand, 49308693 - 49308129
Alignment:
Q  15 cacaactattaatttttaattttctttcacttgacatccttctttatctcgtgggtactattatcatagtaaaaaattgcatgt--gtgtctttttcttc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  49308693 cacaactattaatttttaattttctttcacttgacatccttctttatctcgtgggtactattatcatagtaaaaaattgcatgttcgtgtctttttcttc 49308594  T
Q  113 cacaattgctaaagtccttagaaacatccc-tttgattttctaggtttccctttcgttatcttctgtgcatatctaacaacctaaaattatcatatccaa 211  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49308593 cacaattgttaaagtccttagaaacatcccctttgattttctaggtttccctttcgttatcttctgtgcatatctaacaacctaaaattatcatatccaa 49308494  T
Q  212 gcaaataattatcaagtgcaattttataaaaactatgaaattcaaacaacagaactttctcatacaaaaatcccatgaatttatgccaacattaatttca 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49308493 gcaaataattatcaagtgcaattttataaaaactatgaaattcaaacaacagaactttctcatacaaaaatcccatgaatttatgccaacattaatttca 49308394  T
Q  312 tgggtaatccaccactgtttcgtaccaatatagtcatgtagcctttcaattttaatgattcaggcttaatcgaatttgaagaaaaagaggggaaaaactg 411  Q
    ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49308393 tgggtaatccaccactgtttcgtacc---atagtcatgtagcctttcaattttaatgattcaggcttaatcgaatttgaagaaaaagaggggaaaaactg 49308297  T
Q  412 gaatcgtagcaggctatgaggataggggtgaccctttttaaaggtggaggttgtagtgcatgaccctttttaaagagcaattaaatctgaagcgttgatt 511  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49308296 gaatcgtagcatgctatgaggataggggtgaccctttttaaa-gtggaggttgtagtgcatgaccctttttaaagagcaattaaatctgaagcgttgatt 49308198  T
Q  512 ttgatccaatggttcaaattaattcctctcatcctctcattataactactcctctcacttgatatgccc 580  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49308197 ttgatccaatgatccaaattaattcctctcatcctctcattataactactcctctcacttgatatgccc 49308129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 337 - 514
Target Start/End: Complemental strand, 26250378 - 26250201
Alignment:
Q  337 caatatagtcatgtagcctttcaattttaatgattcaggcttaatcgaatttgaagaaaaagaggggaaaaactggaatcgtagcaggctatgaggatag 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||    
T  26250378 caatatagtcatgtagcctttcaattttaatgattcaggcttaatcgaatttgaagaaaaagagggggaaaattggaatcgtagtaggctatgaggatag 26250279  T
Q  437 gggtgaccctttttaaaggtggaggttgtagtgcatgaccctttttaaagagcaattaaatctgaagcgttgattttg 514  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26250278 gggtgatcctttttaaaggtggaggttgtagtgcatgaccctttttaaagagcaattaaatctgaagcgttgattttg 26250201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 603 - 750
Target Start/End: Complemental strand, 10973169 - 10973022
Alignment:
Q  603 gatccattgactctaagagtaactctattgatttactccaaatcttatcccttaatattgctgcccaacatggttggtctaacatatggttagaaagtga 702  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  10973169 gatccattgactctaagagtaactctattgacttactccaaatcttatcccttaatattgctgcccaacatggttggtctaacataaggttggaaagtga 10973070  T
Q  703 ctcttccaatgcgcttcttgtgttcaaaaatttatcgttggtgcctat 750  Q
    |||||| | ||| |||||||||||||||||||||||||||||||||||    
T  10973069 ctcttctagtgcacttcttgtgttcaaaaatttatcgttggtgcctat 10973022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 451 - 580
Target Start/End: Original strand, 53467210 - 53467339
Alignment:
Q  451 aaaggtggaggttgtagtgcatgaccctttttaaagagcaattaaatctgaagcgttgattttgatccaatggttcaaattaattcctctcatcctctca 550  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | || ||||||||||||||||||||||    
T  53467210 aaaggtagaggttgtagtgcatgaccctttttaaagagcaattaaatttgaagcgttgattttgatccaatgatccagattaattcctctcatcctctca 53467309  T
Q  551 ttataactactcctctcacttgatatgccc 580  Q
    ||||||||||||||| ||||||||||||||    
T  53467310 ttataactactcctcccacttgatatgccc 53467339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 459 - 577
Target Start/End: Complemental strand, 37915528 - 37915410
Alignment:
Q  459 aggttgtagtgcatgaccctttttaaagagcaattaaatctgaagcgttgattttgatccaatggttcaaattaattcctctcatcctctcattataact 558  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||    
T  37915528 aggttgtagtgcatgaccctttttaaagaacaattaaatctgaagcgttgattttgatccaatggtctagattaattcctctcatcctctcattataact 37915429  T
Q  559 actcctctcacttgatatg 577  Q
    |||||||||||||||||||    
T  37915428 actcctctcacttgatatg 37915410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 451 - 580
Target Start/End: Complemental strand, 1093300 - 1093172
Alignment:
Q  451 aaaggtggaggttgtagtgcatgaccctttttaaagagcaattaaatctgaagcgttgattttgatccaatggttcaaattaattcctctcatcctctca 550  Q
    ||||||||||| |||||||||||||||||||||||||||||| | ||||||| ||||||||| ||||||| |||  ||||||||||||||||| ||||||    
T  1093300 aaaggtggaggatgtagtgcatgaccctttttaaagagcaataacatctgaaacgttgatttagatccaacggtctaaattaattcctctcat-ctctca 1093202  T
Q  551 ttataactactcctctcacttgatatgccc 580  Q
    || |||||||||||||||||||||||||||    
T  1093201 ttgtaactactcctctcacttgatatgccc 1093172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 451 - 580
Target Start/End: Original strand, 50704275 - 50704396
Alignment:
Q  451 aaaggtggaggttgtagtgcatgaccctttttaaagagcaattaaatctgaagcgttgattttgatccaatggttcaaattaattcctctcatcctctca 550  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |         
T  50704275 aaaggtagaggttgtagtgcatgaccctttttaaaaagcaattaaatctgaagcgttgattttgatccaatggtccagattaattcctctcattcg---- 50704370  T
Q  551 ttataactactcctctcacttgatatgccc 580  Q
        ||||||||||||||||||||||||||    
T  50704371 ----aactactcctctcacttgatatgccc 50704396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 529 - 580
Target Start/End: Original strand, 49308833 - 49308884
Alignment:
Q  529 attaattcctctcatcctctcattataactactcctctcacttgatatgccc 580  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49308833 attaattcctctcatcctctcattataactactcctctcacttgatatgccc 49308884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 506 - 580
Target Start/End: Complemental strand, 50703816 - 50703742
Alignment:
Q  506 ttgattttgatccaatggttcaaattaattcctctcatcctctcattataactactcctctcacttgatatgccc 580  Q
    |||||||||||||||||| | |  || |||||||||||||||||||| |||||||||||||||||||||||||||    
T  50703816 ttgattttgatccaatggctgaggtttattcctctcatcctctcattttaactactcctctcacttgatatgccc 50703742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 471 - 556
Target Start/End: Complemental strand, 46889434 - 46889349
Alignment:
Q  471 atgaccctttttaaagagcaattaaatctgaagcgttgattttgatccaatggttcaaattaattcctctcatcctctcattataa 556  Q
    ||||||||||| ||||| ||||||||||||| | ||||||||||||| || |||  |||||||||||||||| |||||||||||||    
T  46889434 atgacccttttgaaagaacaattaaatctgaggtgttgattttgatctaacggtctaaattaattcctctcaccctctcattataa 46889349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 478 - 552
Target Start/End: Original strand, 20111849 - 20111923
Alignment:
Q  478 tttttaaagagcaattaaatctgaagcgttgattttgatccaatggttcaaattaattcctctcatcctctcatt 552  Q
    ||||||||||| |||||||| |||||||| ||||| ||||||| | |  ||||||||||||||||||||||||||    
T  20111849 tttttaaagagtaattaaatttgaagcgtcgatttagatccaacgatcaaaattaattcctctcatcctctcatt 20111923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 472 - 555
Target Start/End: Complemental strand, 36863992 - 36863910
Alignment:
Q  472 tgaccctttttaaagagcaattaaatctgaagcgttgattttgatccaatggttcaaattaattcctctcatcctctcattata 555  Q
    ||||||||||||||||||| || |||||||  ||||||||| |||||||  ||  |||||||| |||||||| |||||||||||    
T  36863992 tgaccctttttaaagagcattttaatctgagccgttgatttagatccaacagtctaaattaatccctctcat-ctctcattata 36863910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 506 - 579
Target Start/End: Complemental strand, 46915868 - 46915796
Alignment:
Q  506 ttgattttgatccaatggttcaaattaattcctctcatcctctcattataactactcctctcacttgatatgcc 579  Q
    |||||||||||| ||||||| |  ||  ||||||||||| ||||||| |||| |||||||||||||||||||||    
T  46915868 ttgattttgatctaatggttgaggtttgttcctctcatc-tctcattttaacaactcctctcacttgatatgcc 46915796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 535 - 580
Target Start/End: Original strand, 55337591 - 55337635
Alignment:
Q  535 tcctctcatcctctcattataactactcctctcacttgatatgccc 580  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||    
T  55337591 tcctctcatc-tctcattataattactcctctcacttgatatgccc 55337635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 546 - 577
Target Start/End: Original strand, 51149164 - 51149195
Alignment:
Q  546 tctcattataactactcctctcacttgatatg 577  Q
    ||||||||||||||||||||||||||||||||    
T  51149164 tctcattataactactcctctcacttgatatg 51149195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 545 - 580
Target Start/End: Complemental strand, 55336873 - 55336838
Alignment:
Q  545 ctctcattataactactcctctcacttgatatgccc 580  Q
    |||||||||||| |||||||||||||||||||||||    
T  55336873 ctctcattataattactcctctcacttgatatgccc 55336838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 526 - 580
Target Start/End: Complemental strand, 18387699 - 18387646
Alignment:
Q  526 caaattaattcctctcatcctctcattataactactcctctcacttgatatgccc 580  Q
    |||| |||||||||| ||| ||||||| ||||||||||||||| |||||||||||    
T  18387699 caaaataattcctcttatc-tctcattgtaactactcctctcatttgatatgccc 18387646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 535 - 580
Target Start/End: Complemental strand, 25080859 - 25080815
Alignment:
Q  535 tcctctcatcctctcattataactactcctctcacttgatatgccc 580  Q
    |||||||||| ||||| |||||| ||||||||||||||||||||||    
T  25080859 tcctctcatc-tctcactataacaactcctctcacttgatatgccc 25080815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 535 - 580
Target Start/End: Original strand, 25081550 - 25081594
Alignment:
Q  535 tcctctcatcctctcattataactactcctctcacttgatatgccc 580  Q
    |||||||||| ||||| |||||| ||||||||||||||||||||||    
T  25081550 tcctctcatc-tctcactataacaactcctctcacttgatatgccc 25081594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 132; Significance: 4e-68; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 599 - 750
Target Start/End: Complemental strand, 120623 - 120472
Alignment:
Q  599 gagggatccattgactctaagagtaactctattgatttactccaaatcttatcccttaatattgctgcccaacatggttggtctaacatatggttagaaa 698  Q
    |||||| |||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  120623 gagggacccattgactctatgagtaactctattgacttactccaaatcttatcccctaatattgctgcccaacatggttggtctaacatatggttagaaa 120524  T
Q  699 gtgactcttccaatgcgcttcttgtgttcaaaaatttatcgttggtgcctat 750  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  120523 gtgactcttccagtgcgcttcttgtgttcaaaaatttatcgttggtgcctat 120472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 3e-53; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 458 - 580
Target Start/End: Original strand, 20105000 - 20105122
Alignment:
Q  458 gaggttgtagtgcatgaccctttttaaagagcaattaaatctgaagcgttgattttgatccaatggttcaaattaattcctctcatcctctcattataac 557  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  20105000 gaggttgtagtgcatgaccctttttaaagaccaattaaatctgaagcgttgattttgatccaatgattcagattaattcctctcatcctctcattataac 20105099  T
Q  558 tactcctctcacttgatatgccc 580  Q
    || ||||||||||||||||||||    
T  20105100 tagtcctctcacttgatatgccc 20105122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 489 - 552
Target Start/End: Original strand, 44495085 - 44495148
Alignment:
Q  489 caattaaatctgaagcgttgattttgatccaatggttcaaattaattcctctcatcctctcatt 552  Q
    ||||||||| |||||||||||||| ||||||| |||  |||||||||||||||| |||||||||    
T  44495085 caattaaatttgaagcgttgatttagatccaacggtctaaattaattcctctcaccctctcatt 44495148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 102 - 170
Target Start/End: Original strand, 25230032 - 25230099
Alignment:
Q  102 tctttttcttccacaattgctaaagtccttagaaacatccctttgattttctaggtttccctttcgtta 170  Q
    |||||||||| ||| |||| | || |||||||||| | |||||||||||||||||||||| ||||||||    
T  25230032 tctttttctttcacgattgttcaa-tccttagaaaaacccctttgattttctaggtttccatttcgtta 25230099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 1e-52; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 451 - 580
Target Start/End: Complemental strand, 51702795 - 51702666
Alignment:
Q  451 aaaggtggaggttgtagtgcatgaccctttttaaagagcaattaaatctgaagcgttgattttgatccaatggttcaaattaattcctctcatcctctca 550  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | || ||||||||||||||||||||||    
T  51702795 aaaggtagaggttgtagtgcatgaccctttttaaagagcaattaaatctgaaacgttgattttgatccaatgatccagattaattcctctcatcctctca 51702696  T
Q  551 ttataactactcctctcacttgatatgccc 580  Q
    | ||||||||||||||||||||||||||||    
T  51702695 tcataactactcctctcacttgatatgccc 51702666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 451 - 580
Target Start/End: Complemental strand, 24844213 - 24844084
Alignment:
Q  451 aaaggtggaggttgtagtgcatgaccctttttaaagagcaattaaatctgaagcgttgattttgatccaatggttcaaattaattcctctcatcctctca 550  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||    
T  24844213 aaaggtagaggttgtagtgcatgaccctttttaaagagcaattaaatctgaagcgttgattttgatccaatggttcagattaatttctctcattctctca 24844114  T
Q  551 ttataactactcctctcacttgatatgccc 580  Q
    || || ||| ||||||||||||||||||||    
T  24844113 ttctagctattcctctcacttgatatgccc 24844084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 459 - 579
Target Start/End: Original strand, 49648163 - 49648283
Alignment:
Q  459 aggttgtagtgcatgaccctttttaaagagcaattaaatctgaagcgttgattttgatccaatggttcaaattaattcctctcatcctctcattataact 558  Q
    |||||| ||| ||||||||||||||||| ||||||||||||||||||||||||| |||  |||||| ||||||||||||||||| |||||||||||||||    
T  49648163 aggttgaagtacatgaccctttttaaagtgcaattaaatctgaagcgttgatttagattaaatggtccaaattaattcctctcaccctctcattataact 49648262  T
Q  559 actcctctcacttgatatgcc 579  Q
    |||||||||||||||||||||    
T  49648263 actcctctcacttgatatgcc 49648283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 451 - 577
Target Start/End: Complemental strand, 33114215 - 33114086
Alignment:
Q  451 aaaggtggaggttgtagtgcatgaccctttttaaagagcaattaaatctgaagcgttgattttgatccaatggt---tcaaattaattcctctcatcctc 547  Q
    |||||| |||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||   |   |||||||| | ||||||||    
T  33114215 aaaggtagaggttgtagtgcatgattctttttaaagagtaattaaatctgaagcgttgattttgatccaatggtctatattattaattcttttcatcctc 33114116  T
Q  548 tcattataactactcctctcacttgatatg 577  Q
    ||||||||  ||||||||||||||||||||    
T  33114115 tcattatagttactcctctcacttgatatg 33114086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 452 - 576
Target Start/End: Complemental strand, 49480031 - 49479909
Alignment:
Q  452 aaggtggaggttgtagtgcatgaccctttttaaagagcaattaaatctgaagcgttgattttgatccaatggttcaaattaattcctctcatcctctcat 551  Q
    |||||| ||||||||||| |||| | |||||||| |||||||||||||||| ||||||||||||||||||| || |||||| ||  |||||| |||| ||    
T  49480031 aaggtgaaggttgtagtgtatgatc-tttttaaaaagcaattaaatctgaaacgttgattttgatccaatgatttaaattagtttatctcat-ctctaat 49479934  T
Q  552 tataactactcctctcacttgatat 576  Q
    |||||||  ||||||||||||||||    
T  49479933 tataactcatcctctcacttgatat 49479909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 472 - 577
Target Start/End: Original strand, 11380933 - 11381037
Alignment:
Q  472 tgaccctttttaaagagcaattaaatctgaagcgttgattttgatccaatggttcaaattaattcctctcatcctctcattataactactcctctcactt 571  Q
    |||||| |||||||||||| || ||||| |  | |||||||  |||||| |||  |||||||||||||||||| ||||||||||||||||||||||||||    
T  11380933 tgacccattttaaagagcattttaatctcagcctttgatttaaatccaacggtcgaaattaattcctctcatc-tctcattataactactcctctcactt 11381031  T
Q  572 gatatg 577  Q
    ||||||    
T  11381032 gatatg 11381037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 472 - 552
Target Start/End: Complemental strand, 50185386 - 50185306
Alignment:
Q  472 tgaccctttttaaagagcaattaaatctgaagcgttgattttgatccaatggttcaaattaattcctctcatcctctcatt 552  Q
    |||||||||| ||||| ||||||||||||| ||||||||||||||| || |||  |||||||||||||||| |||||||||    
T  50185386 tgacccttttgaaagaacaattaaatctgaggcgttgattttgatctaacggtctaaattaattcctctcaccctctcatt 50185306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 451 - 511
Target Start/End: Complemental strand, 50848469 - 50848409
Alignment:
Q  451 aaaggtggaggttgtagtgcatgaccctttttaaagagcaattaaatctgaagcgttgatt 511  Q
    ||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  50848469 aaaggtggaggatgtagtgtatgaccctttttaaagagcagttaaatctgaagcgttgatt 50848409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 451 - 524
Target Start/End: Complemental strand, 12920474 - 12920401
Alignment:
Q  451 aaaggtggaggttgtagtgcatgaccctttttaaagagcaattaaatctgaagcgttgattttgatccaatggt 524  Q
    ||||||||||| |||||||||||||||||| ||| ||||||| ||||||||| |||| ||||  ||||||||||    
T  12920474 aaaggtggaggatgtagtgcatgaccctttctaaggagcaataaaatctgaaccgtttatttcaatccaatggt 12920401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 470 - 549
Target Start/End: Original strand, 5941321 - 5941400
Alignment:
Q  470 catgaccctttttaaagagcaattaaatctgaagcgttgattttgatccaatggttcaaattaattcctctcatcctctc 549  Q
    ||||||||||||||| ||||||||| ||||||||||||||||| |||| ||  ||  | |||||||||||||| ||||||    
T  5941321 catgaccctttttaatgagcaattatatctgaagcgttgatttagatctaactgtctatattaattcctctcaccctctc 5941400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 518 - 556
Target Start/End: Original strand, 52255425 - 52255463
Alignment:
Q  518 caatggttcaaattaattcctctcatcctctcattataa 556  Q
    |||||||| | ||||||||||||||||||||||||||||    
T  52255425 caatggttaatattaattcctctcatcctctcattataa 52255463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 5e-49; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 451 - 578
Target Start/End: Original strand, 32577294 - 32577420
Alignment:
Q  451 aaaggtggaggttgtagtgcatgaccctttttaaagagcaattaaatctgaagcgttgattttgatccaatggttcaaattaattcctctcatcctctca 550  Q
    |||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  32577294 aaaggtagaggttgtagagcatgacc-tttttaaagagcaattaaatctgaagcgttgattttgatccaatggttcagattaattcctctcatcctctca 32577392  T
Q  551 ttataactactcctctcacttgatatgc 578  Q
    || |||| ||||||||||||||||||||    
T  32577393 ttctaacaactcctctcacttgatatgc 32577420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 451 - 577
Target Start/End: Complemental strand, 9146192 - 9146066
Alignment:
Q  451 aaaggtggaggttgtagtgcatgaccctttttaaagagcaattaaatctgaagcgttgattttgatccaatggttcaaattaattcctctcatcctctca 550  Q
    |||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||  || |||||||||||||||||||||||||    
T  9146192 aaaggtagaggttgtagtgaatgaccctttttaaagaacaattaaatctgaagcgttgattttgatccaaatgtccaaattaattcctctcatcctctca 9146093  T
Q  551 ttataactactcctctcacttgatatg 577  Q
    |||||| ||| ||||||||||||||||    
T  9146092 ttataattacacctctcacttgatatg 9146066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 458 - 577
Target Start/End: Original strand, 12294201 - 12294320
Alignment:
Q  458 gaggttgtagtgcatgaccctttttaaagagcaattaaatctgaagcgttgattttgatccaatggttcaaattaattcctctcatcctctcattataac 557  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||  ||     
T  12294201 gaggttgtagtgcatgatcctttttaaagagcaattaaatatgaagcgttgattttgatccaatggttcagattaattcatctcatcctctcatttaaat 12294300  T
Q  558 tactcctctcacttgatatg 577  Q
    ||||||||||||||||||||    
T  12294301 tactcctctcacttgatatg 12294320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 471 - 580
Target Start/End: Complemental strand, 42745742 - 42745633
Alignment:
Q  471 atgaccctttttaaagagcaattaaatctgaagcgttgattttgatccaatggttcaaattaattcctctcatcctctcattataactactcctctcact 570  Q
    ||||| |||||||||| ||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||| |||||||||||| ||||||||    
T  42745742 atgacactttttaaagtgcaattaaatctgaagcgttgatttagatccaacggtccaaattaattcctctcatcctcttattataactactactctcact 42745643  T
Q  571 tgatatgccc 580  Q
    ||||||||||    
T  42745642 tgatatgccc 42745633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 478 - 580
Target Start/End: Complemental strand, 12293567 - 12293465
Alignment:
Q  478 tttttaaagagcaattaaatctgaagcgttgattttgatccaatggttcaaattaattcctctcatcctctcattataactactcctctcacttgatatg 577  Q
    |||||||||| |||||||||||||||||||||||||||||||||| | || ||||||| ||||||||||||||||  |  ||||||||||||||||||||    
T  12293567 tttttaaagaccaattaaatctgaagcgttgattttgatccaatgatccagattaatttctctcatcctctcatttaagttactcctctcacttgatatg 12293468  T
Q  578 ccc 580  Q
    |||    
T  12293467 ccc 12293465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 472 - 552
Target Start/End: Original strand, 42418161 - 42418241
Alignment:
Q  472 tgaccctttttaaagagcaattaaatctgaagcgttgattttgatccaatggttcaaattaattcctctcatcctctcatt 552  Q
    |||||||||| ||||| ||||||||||||| ||||||||||||||| || |||  |||||||||||||||| |||||||||    
T  42418161 tgacccttttgaaagaacaattaaatctgaggcgttgattttgatctaacggtctaaattaattcctctcaccctctcatt 42418241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 534 - 579
Target Start/End: Complemental strand, 7831678 - 7831633
Alignment:
Q  534 ttcctctcatcctctcattataactactcctctcacttgatatgcc 579  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  7831678 ttcctctcatcctctcattataactactcctctcacttgatatgcc 7831633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 506 - 580
Target Start/End: Original strand, 41115465 - 41115538
Alignment:
Q  506 ttgattttgatccaatggttcaaattaattcctctcatcctctcattataactactcctctcacttgatatgccc 580  Q
    |||||||||||| ||||||| |  || |||||||||||| ||||||| |||| ||||||||||||||||||||||    
T  41115465 ttgattttgatctaatggttgaggtttattcctctcatc-tctcattttaacaactcctctcacttgatatgccc 41115538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 484 - 550
Target Start/End: Complemental strand, 32576692 - 32576627
Alignment:
Q  484 aagagcaattaaatctgaagcgttgattttgatccaatggttcaaattaattcctctcatcctctca 550  Q
    |||||||||||||| ||||||||||||||| || ||||||  || |||||||| |||||||||||||    
T  32576692 aagagcaattaaatttgaagcgttgattttaattcaatgg-ccagattaattcttctcatcctctca 32576627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 506 - 577
Target Start/End: Complemental strand, 18977914 - 18977844
Alignment:
Q  506 ttgattttgatccaatggttcaaattaattcctctcatcctctcattataactactcctctcacttgatatg 577  Q
    |||||||||||| ||||||| |  || ||||||||||| |||||||| |||| |||||||| ||||||||||    
T  18977914 ttgattttgatctaatggttgaggtttattcctctcat-ctctcattttaacaactcctctaacttgatatg 18977844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 533 - 575
Target Start/End: Original strand, 32949844 - 32949885
Alignment:
Q  533 attcctctcatcctctcattataactactcctctcacttgata 575  Q
    ||||||||||||||||||||||||| |||||||||| ||||||    
T  32949844 attcctctcatcctctcattataac-actcctctcatttgata 32949885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 506 - 580
Target Start/End: Original strand, 44545238 - 44545311
Alignment:
Q  506 ttgattttgatccaatggttcaaattaattcctctcatcctctcattataactactcctctcacttgatatgccc 580  Q
    |||||||||||| ||||||| |  || |||||| ||||| ||||||| |||| |||| |||||||||||||||||    
T  44545238 ttgattttgatctaatggttgaggtttattcctatcatc-tctcattttaacaactcatctcacttgatatgccc 44545311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 533 - 578
Target Start/End: Original strand, 7832382 - 7832426
Alignment:
Q  533 attcctctcatcctctcattataactactcctctcacttgatatgc 578  Q
    |||||||||||| |||||||||||||| |||||||| |||||||||    
T  7832382 attcctctcatcatctcattataacta-tcctctcatttgatatgc 7832426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 535 - 568
Target Start/End: Complemental strand, 13784086 - 13784053
Alignment:
Q  535 tcctctcatcctctcattataactactcctctca 568  Q
    |||||||||||||||||| |||||||||||||||    
T  13784086 tcctctcatcctctcattttaactactcctctca 13784053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 666 - 739
Target Start/End: Complemental strand, 27846187 - 27846114
Alignment:
Q  666 cccaacatggttggtctaacatatggttagaaagtgactcttccaatgcgcttcttgtgttcaaaaatttatcg 739  Q
    |||||||||||||| | ||||  ||||| ||||||||||||||||  |||||||  || ||||||||| |||||    
T  27846187 cccaacatggttggacaaacaattggttggaaagtgactcttccagggcgcttcaggttttcaaaaatatatcg 27846114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 91; Significance: 1e-43; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 451 - 577
Target Start/End: Original strand, 23650 - 23776
Alignment:
Q  451 aaaggtggaggttgtagtgcatgaccctttttaaagagcaattaaatctgaagcgttgattttgatccaatggttcaaattaattcctctcatcctctca 550  Q
    |||||| ||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||| |  | ||||||||||||||||||||||    
T  23650 aaaggtagaggttgtagtgcatgatcctttttaaagaataattaaatctgaagcgttgattttgatccaatgatctatattaattcctctcatcctctca 23749  T
Q  551 ttataactactcctctcacttgatatg 577  Q
    ||||||||||| |||||||||||||||    
T  23750 ttataactactactctcacttgatatg 23776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 2e-39; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 459 - 578
Target Start/End: Complemental strand, 42848052 - 42847933
Alignment:
Q  459 aggttgtagtgcatgaccctttttaaagagcaattaaatctgaagcgttgattttgatccaatggttcaaattaattcctctcatcctctcattataact 558  Q
    |||||| ||| ||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||| |||| |||||||||||| |||||||||||||||    
T  42848052 aggttgaagtacatgatcctttttaaagtgcaattaaatctgaagcgttgatttagatccaatggtccaaactaattcctctcaccctctcattataact 42847953  T
Q  559 actcctctcacttgatatgc 578  Q
    | ||||||||||||||||||    
T  42847952 attcctctcacttgatatgc 42847933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 470 - 578
Target Start/End: Original strand, 45632361 - 45632468
Alignment:
Q  470 catgaccctttttaaagagcaattaaatctgaagcgttgattttgatccaatggttcaaattaattcctctcatcctctcattataactactcctctcac 569  Q
    ||||||||||||||||| |||||||||||| |||||||||||| ||||||| |||| ||||||||||||||||| |||||||| ||||||||||||||||    
T  45632361 catgaccctttttaaagtgcaattaaatctaaagcgttgatttagatccaacggtttaaattaattcctctcat-ctctcattgtaactactcctctcac 45632459  T
Q  570 ttgatatgc 578  Q
    |||||||||    
T  45632460 ttgatatgc 45632468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 451 - 543
Target Start/End: Original strand, 1678296 - 1678388
Alignment:
Q  451 aaaggtggaggttgtagtgcatgaccctttttaaagagcaattaaatctgaagcgttgattttgatccaatggttcaaattaattcctctcat 543  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||| |||||||||||||||    
T  1678296 aaaggtagaggttgtagtgcatgaccctttttaaagagcaattaaatttaaagcgttgattttgatcaaatggttcagattaattcctctcat 1678388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 470 - 579
Target Start/End: Original strand, 42848595 - 42848704
Alignment:
Q  470 catgaccctttttaaagagcaattaaatctgaagcgttgattttgatccaatggttcaaattaattcctctcatcctctcattataactactcctctcac 569  Q
    |||||| |||||||||| ||||||||||||||||||||||||| ||| ||| ||| ||||||||||| ||||| |||||| |||||||||||||||| |     
T  42848595 catgacactttttaaagtgcaattaaatctgaagcgttgatttagattcaacggtccaaattaattcttctcaccctctccttataactactcctctaat 42848694  T
Q  570 ttgatatgcc 579  Q
    ||||||||||    
T  42848695 ttgatatgcc 42848704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 487 - 580
Target Start/End: Complemental strand, 1677662 - 1677569
Alignment:
Q  487 agcaattaaatctgaagcgttgattttgatccaatggttcaaattaattcctctcatcctctcattataactactcctctcacttgatatgccc 580  Q
    ||||||||||||||||||||||||||| || |||| ||||| |||||||  | ||||||||||||| |||||||||||||||||||||||||||    
T  1677662 agcaattaaatctgaagcgttgattttaattcaatagttcagattaatttttttcatcctctcattttaactactcctctcacttgatatgccc 1677569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 451 - 552
Target Start/End: Complemental strand, 30266450 - 30266349
Alignment:
Q  451 aaaggtggaggttgtagtgcatgaccctttttaaagagcaattaaatctgaagcgttgattttgatccaatggttcaaattaattcctctcatcctctca 550  Q
    ||||||||| |||  ||| |||||||||||||||||||||||||||||||||| |||||||| ||||||| |||  |||||||||||||||| |||||||    
T  30266450 aaaggtggatgttacagtccatgaccctttttaaagagcaattaaatctgaagtgttgatttagatccaacggtctaaattaattcctctcaccctctca 30266351  T
Q  551 tt 552  Q
    ||    
T  30266350 tt 30266349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 600 - 658
Target Start/End: Original strand, 74379 - 74437
Alignment:
Q  600 agggatccattgactctaagagtaactctattgatttactccaaatcttatcccttaat 658  Q
    |||||| |||||||||||| |||||||||||||| |||||| ||| |||||||||||||    
T  74379 agggattcattgactctaaaagtaactctattgacttactctaaaccttatcccttaat 74437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 506 - 580
Target Start/End: Complemental strand, 44356887 - 44356814
Alignment:
Q  506 ttgattttgatccaatggttcaaattaattcctctcatcctctcattataactactcctctcacttgatatgccc 580  Q
    |||||||||||| ||||||| |  || |||||||||||| ||||||| |||| ||||||||||||||||||||||    
T  44356887 ttgattttgatctaatggttgaggtttattcctctcatc-tctcattttaacaactcctctcacttgatatgccc 44356814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 475 - 552
Target Start/End: Complemental strand, 25616955 - 25616878
Alignment:
Q  475 ccctttttaaagagcaattaaatctgaagcgttgattttgatccaatggttcaaattaattcctctcatcctctcatt 552  Q
    ||||||||| |||||||||||||||||||| |||||||  |||||| |||  || |||||| |||||| |||||||||    
T  25616955 ccctttttacagagcaattaaatctgaagccttgatttaaatccaacggtctaagttaatttctctcaccctctcatt 25616878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 506 - 577
Target Start/End: Original strand, 44357569 - 44357639
Alignment:
Q  506 ttgattttgatccaatggttcaaattaattcctctcatcctctcattataactactcctctcacttgatatg 577  Q
    |||||||||||| ||||||| |  || |||||||||||| ||||||| |||| | |||||||||||||||||    
T  44357569 ttgattttgatctaatggttgaggtttattcctctcatc-tctcattttaacaattcctctcacttgatatg 44357639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 472 - 566
Target Start/End: Complemental strand, 28682522 - 28682429
Alignment:
Q  472 tgaccctttttaaagagcaattaaatctgaagcgttgattttgatccaatggttcaaattaattcctctcatcctctcattataactactcctct 566  Q
    ||||| |||||||||||||||| | || || || ||||||| |||||||  |   |||||||||| |||||| || |||||||||||||||||||    
T  28682522 tgaccatttttaaagagcaatttattccgaggcattgatttagatccaacagactaaattaattcatctcat-ctttcattataactactcctct 28682429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 467 - 552
Target Start/End: Original strand, 23732875 - 23732960
Alignment:
Q  467 gtgcatgaccctttttaaagagcaattaaatctgaagcgttgattttgatccaatggttcaaattaattcctctcatcctctcatt 552  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||| |||| || |||  |||||||||||||||| |||||||||    
T  23732875 gtgcatgaccctttttaaagaacaattaaatctgaagtgttgatttagatctaacggtctaaattaattcctctcaccctctcatt 23732960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 472 - 577
Target Start/End: Complemental strand, 51097621 - 51097517
Alignment:
Q  472 tgaccctttttaaagagcaattaaatctgaagcgttgattttgatccaatggttcaaattaattcctctcatcctctcattataactactcctctcactt 571  Q
    |||||| |||||||||||| || ||||| |  | |||||||  |||||| |||  |||||||||||||||||| ||||||||||||||||||||||||||    
T  51097621 tgacccattttaaagagcattttaatctcagcctttgatttaaatccaacggtcgaaattaattcctctcatc-tctcattataactactcctctcactt 51097523  T
Q  572 gatatg 577  Q
    ||||||    
T  51097522 gatatg 51097517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 472 - 580
Target Start/End: Original strand, 19534719 - 19534826
Alignment:
Q  472 tgaccctttttaaagagcaattaaatctgaagcgttgattttgatccaatggttcaaattaattcctctcatcctctcattataactactcctctcactt 571  Q
    ||||||||||||||||||| || ||| |||  ||||||||| |||||||  ||  |||||||| |||||||| ||||||||||| | |||||||| ||||    
T  19534719 tgaccctttttaaagagcattttaatttgagccgttgatttagatccaacagtctaaattaatccctctcat-ctctcattatatccactcctcttactt 19534817  T
Q  572 gatatgccc 580  Q
    |||||||||    
T  19534818 gatatgccc 19534826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 534 - 580
Target Start/End: Original strand, 36930179 - 36930225
Alignment:
Q  534 ttcctctcatcctctcattataactactcctctcacttgatatgccc 580  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||    
T  36930179 ttcctctcatcctctcattataactacttctctcacttgatatgccc 36930225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 451 - 522
Target Start/End: Original strand, 28763097 - 28763168
Alignment:
Q  451 aaaggtggaggttgtagtgcatgaccctttttaaagagcaattaaatctgaagcgttgattttgatccaatg 522  Q
    ||||||| ||| ||||||   |||||||||||||||| ||||| ||||||| ||||||||||||||||||||    
T  28763097 aaaggtgtaggatgtagtatgtgaccctttttaaagaacaatttaatctgaggcgttgattttgatccaatg 28763168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 534 - 571
Target Start/End: Complemental strand, 43250920 - 43250883
Alignment:
Q  534 ttcctctcatcctctcattataactactcctctcactt 571  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  43250920 ttcctctcatcctctcattataattactcctctcactt 43250883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 474 - 512
Target Start/End: Complemental strand, 12644211 - 12644173
Alignment:
Q  474 accctttttaaagagcaattaaatctgaagcgttgattt 512  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  12644211 accctttttaaagagtaattaaatttgaagcgttgattt 12644173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 474 - 552
Target Start/End: Original strand, 18970597 - 18970675
Alignment:
Q  474 accctttttaaagagcaattaaatctgaagcgttgattttgatccaatggttcaaattaattcctctcatcctctcatt 552  Q
    ||||||||||||||| | |||||| |||||||| ||||| ||||||| | |  ||||||||||||||||||||||||||    
T  18970597 accctttttaaagagtagttaaatttgaagcgtcgatttagatccaacgatcaaaattaattcctctcatcctctcatt 18970675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 506 - 580
Target Start/End: Complemental strand, 22046500 - 22046427
Alignment:
Q  506 ttgattttgatccaatggttcaaattaattcctctcatcctctcattataactactcctctcacttgatatgccc 580  Q
    |||||||||||| ||||||| |  || |||||||||||| ||||||| |||| ||||||||||||||||||||||    
T  22046500 ttgattttgatctaatggttgaggtttattcctctcatc-tctcattttaacaactcctctcacttgatatgccc 22046427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 506 - 580
Target Start/End: Complemental strand, 22058908 - 22058835
Alignment:
Q  506 ttgattttgatccaatggttcaaattaattcctctcatcctctcattataactactcctctcacttgatatgccc 580  Q
    |||||||||||| ||||||| |  || |||||||||||| ||||||| |||| ||||||||||||||||||||||    
T  22058908 ttgattttgatctaatggttgaggtttattcctctcatc-tctcattttaacaactcctctcacttgatatgccc 22058835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 515 - 556
Target Start/End: Complemental strand, 18242735 - 18242694
Alignment:
Q  515 atccaatggttcaaattaattcctctcatcctctcattataa 556  Q
    ||||||||||| | ||||||||||||||||||||||||||||    
T  18242735 atccaatggttaatattaattcctctcatcctctcattataa 18242694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 506 - 577
Target Start/End: Original strand, 22047182 - 22047252
Alignment:
Q  506 ttgattttgatccaatggttcaaattaattcctctcatcctctcattataactactcctctcacttgatatg 577  Q
    |||||||||||| ||||||| |  || |||||||||||| ||||||| |||| | |||||||||||||||||    
T  22047182 ttgattttgatctaatggttgaggtttattcctctcatc-tctcattttaacaattcctctcacttgatatg 22047252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 514 - 565
Target Start/End: Complemental strand, 7520 - 7469
Alignment:
Q  514 gatccaatggttcaaattaattcctctcatcctctcattataactactcctc 565  Q
    ||||||| ||| |||||||||||||| || ||| ||||||||||||||||||    
T  7520 gatccaacggtccaaattaattcctcacaccctttcattataactactcctc 7469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University