View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16059_high_2 (Length: 477)

Name: NF16059_high_2
Description: NF16059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16059_high_2
NF16059_high_2
[»] chr1 (14 HSPs)
chr1 (10-215)||(42829061-42829266)
chr1 (368-460)||(42829402-42829494)
chr1 (143-215)||(30530285-30530357)
chr1 (145-215)||(7423127-7423197)
chr1 (299-330)||(24673066-24673097)
chr1 (299-330)||(32915115-32915146)
chr1 (144-215)||(33669710-33669781)
chr1 (144-215)||(41558106-41558177)
chr1 (145-215)||(42843231-42843302)
chr1 (301-330)||(5687694-5687723)
chr1 (299-328)||(34008179-34008208)
chr1 (299-328)||(47214207-47214236)
chr1 (147-215)||(50777312-50777381)
chr1 (302-330)||(902635-902663)
[»] chr2 (5 HSPs)
chr2 (146-215)||(2308213-2308282)
chr2 (299-330)||(36517193-36517224)
chr2 (301-330)||(10711733-10711762)
chr2 (147-215)||(38572052-38572121)
chr2 (146-182)||(37601351-37601387)
[»] scaffold0020 (1 HSPs)
scaffold0020 (143-215)||(156019-156091)
[»] chr6 (4 HSPs)
chr6 (144-215)||(1803982-1804054)
chr6 (146-215)||(6435149-6435219)
chr6 (145-215)||(19788964-19789034)
chr6 (301-330)||(33651017-33651046)
[»] chr4 (9 HSPs)
chr4 (144-212)||(11063976-11064044)
chr4 (146-215)||(15638243-15638313)
chr4 (298-327)||(7654222-7654251)
chr4 (301-330)||(27408151-27408180)
chr4 (142-214)||(32079223-32079296)
chr4 (150-191)||(41457950-41457991)
chr4 (299-328)||(53654793-53654822)
chr4 (144-215)||(18568701-18568773)
chr4 (301-329)||(51225570-51225598)
[»] chr8 (3 HSPs)
chr8 (141-215)||(2597043-2597118)
chr8 (146-215)||(8074614-8074683)
chr8 (302-330)||(6991854-6991882)
[»] chr7 (11 HSPs)
chr7 (144-214)||(8742497-8742568)
chr7 (145-215)||(17500810-17500880)
chr7 (145-215)||(17552334-17552404)
chr7 (301-330)||(3937155-3937184)
chr7 (301-330)||(21822644-21822673)
chr7 (301-330)||(44184604-44184633)
chr7 (299-328)||(47078282-47078311)
chr7 (146-215)||(49089053-49089122)
chr7 (299-327)||(22638927-22638955)
chr7 (141-213)||(23761182-23761254)
chr7 (175-215)||(25614739-25614779)
[»] chr3 (9 HSPs)
chr3 (145-215)||(23906874-23906945)
chr3 (145-215)||(18713716-18713786)
chr3 (299-329)||(49417573-49417603)
chr3 (146-215)||(54233389-54233459)
chr3 (154-215)||(2009767-2009828)
chr3 (174-215)||(11574667-11574708)
chr3 (301-330)||(46019459-46019488)
chr3 (302-330)||(39671144-39671172)
chr3 (301-329)||(51465947-51465975)
[»] chr5 (7 HSPs)
chr5 (146-215)||(3155115-3155184)
chr5 (146-191)||(12779495-12779540)
chr5 (144-209)||(30301329-30301394)
chr5 (301-330)||(43214104-43214133)
chr5 (301-329)||(3640230-3640258)
chr5 (301-329)||(15953078-15953106)
chr5 (144-215)||(17489461-17489533)


Alignment Details
Target: chr1 (Bit Score: 174; Significance: 2e-93; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 10 - 215
Target Start/End: Original strand, 42829061 - 42829266
Alignment:
Q  10 gtgagatgaaggttatagaactagaaaatgaaagacaagaagaacaagcattgttttcaagattaaaaagattaagcaaacaaccatattgaaagaaaag 109  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  42829061 gtgaaatgaaggttatagaaatagaaaatgaaagacaagaagaacaagcattgttttcaagattaaaaagattaagcaaacaaccatattgaaagaagaa 42829160  T
Q  110 caacagcaaatgtcaattcaaagacaacgagaagaagagtagtgatatttgtataaccatttataacaattttggtgacaaccctcattttctctcttct 209  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||    
T  42829161 caacaacaaatgtcaattcaaagacaacgagaagaagagtagtgatatttgtacaaccatttataacaattttggtgacaacccttcttttctctcttct 42829260  T
Q  210 tattgg 215  Q
    ||||||    
T  42829261 tattgg 42829266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 368 - 460
Target Start/End: Original strand, 42829402 - 42829494
Alignment:
Q  368 tcaagaaaagaaaaattccttagacaagaagaaggtacaatgtcataactttgataagcatggacactgcatatgaatgctagtttaataaag 460  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  42829402 tcaagaaaagaaaaattccttagacaagaagaaggtacaatgtcataactttgataagcatggacagtgcatatgaatgctagtttaataaag 42829494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 143 - 215
Target Start/End: Original strand, 30530285 - 30530357
Alignment:
Q  143 gaagagtagtgatatttgtataaccatttataacaattttggtgacaaccctcattttctctcttcttattgg 215  Q
    ||||||||||||||| |||| ||||||||   |||| |||| |||||||  ||||||||||||||||||||||    
T  30530285 gaagagtagtgatatatgtacaaccatttgggacaactttgatgacaactttcattttctctcttcttattgg 30530357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 215
Target Start/End: Complemental strand, 7423197 - 7423127
Alignment:
Q  145 agagtagtgatatttgtataaccatttataacaattttggtgacaaccctcattttctctcttcttattgg 215  Q
    ||||||||||||||| || ||| |||| |||||| ||| ||||||||| || |||||||| ||||||||||    
T  7423197 agagtagtgatatttatacaactatttttaacaacttttgtgacaaccttccttttctcttttcttattgg 7423127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 330
Target Start/End: Complemental strand, 24673097 - 24673066
Alignment:
Q  299 ataaaatagatgttcaaatatcatttctcttt 330  Q
    ||||||||||||||||||||||||||||||||    
T  24673097 ataaaatagatgttcaaatatcatttctcttt 24673066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 330
Target Start/End: Original strand, 32915115 - 32915146
Alignment:
Q  299 ataaaatagatgttcaaatatcatttctcttt 330  Q
    ||||||||||||||||||||||||||||||||    
T  32915115 ataaaatagatgttcaaatatcatttctcttt 32915146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 33669710 - 33669781
Alignment:
Q  144 aagagtagtgatatttgtataaccatttataacaattttggtgacaaccctcattttctctcttcttattgg 215  Q
    |||||||||||||| |||| ||||||||   |||| |||| ||||||| |||||||| |||||||| |||||    
T  33669710 aagagtagtgatatatgtacaaccatttgggacaactttgatgacaactctcattttttctcttctcattgg 33669781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 215
Target Start/End: Complemental strand, 41558177 - 41558106
Alignment:
Q  144 aagagtagtgatatttgtataaccatttataacaattttggtgacaaccctcattttctctcttcttattgg 215  Q
    ||||||||||||||||||| |||||||| | |||| | | ||||||||  || |||||| ||||||||||||    
T  41558177 aagagtagtgatatttgtacaaccatttgtgacaactattgtgacaactttccttttctttcttcttattgg 41558106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 42843231 - 42843302
Alignment:
Q  145 agagtagtgatatttgtataaccattt-ataacaattttggtgacaaccctcattttctctcttcttattgg 215  Q
    |||||||||||||||||| | ||| || || | |||||||||||||||| |  |||||||||||||||||||    
T  42843231 agagtagtgatatttgtacatccaattgatgataattttggtgacaaccttgtttttctctcttcttattgg 42843302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 330
Target Start/End: Original strand, 5687694 - 5687723
Alignment:
Q  301 aaaatagatgttcaaatatcatttctcttt 330  Q
    ||||||||||||||||||||||||||||||    
T  5687694 aaaatagatgttcaaatatcatttctcttt 5687723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 328
Target Start/End: Complemental strand, 34008208 - 34008179
Alignment:
Q  299 ataaaatagatgttcaaatatcatttctct 328  Q
    ||||||||||||||||||||||||||||||    
T  34008208 ataaaatagatgttcaaatatcatttctct 34008179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 328
Target Start/End: Complemental strand, 47214236 - 47214207
Alignment:
Q  299 ataaaatagatgttcaaatatcatttctct 328  Q
    ||||||||||||||||||||||||||||||    
T  47214236 ataaaatagatgttcaaatatcatttctct 47214207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 215
Target Start/End: Original strand, 50777312 - 50777381
Alignment:
Q  147 agtagtgatatttgtataaccattt-ataacaattttggtgacaaccctcattttctctcttcttattgg 215  Q
    |||| ||||||||||| | ||| || || |||||||||||||||||| |  |||||||||||||||||||    
T  50777312 agtaatgatatttgtacatccaattgatgacaattttggtgacaaccttgtttttctctcttcttattgg 50777381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 330
Target Start/End: Complemental strand, 902663 - 902635
Alignment:
Q  302 aaatagatgttcaaatatcatttctcttt 330  Q
    |||||||||||||||||||||||||||||    
T  902663 aaatagatgttcaaatatcatttctcttt 902635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 146 - 215
Target Start/End: Original strand, 2308213 - 2308282
Alignment:
Q  146 gagtagtgatatttgtataaccatttataacaattttggtgacaaccctcattttctctcttcttattgg 215  Q
    ||||||||||||||||| |||||| ||| |||| |||| |||||||  |||||||||||||||| |||||    
T  2308213 gagtagtgatatttgtacaaccatatatgacaactttgatgacaactttcattttctctcttctcattgg 2308282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 330
Target Start/End: Complemental strand, 36517224 - 36517193
Alignment:
Q  299 ataaaatagatgttcaaatatcatttctcttt 330  Q
    ||||||||||||||||||||||||||||||||    
T  36517224 ataaaatagatgttcaaatatcatttctcttt 36517193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 330
Target Start/End: Complemental strand, 10711762 - 10711733
Alignment:
Q  301 aaaatagatgttcaaatatcatttctcttt 330  Q
    ||||||||||||||||||||||||||||||    
T  10711762 aaaatagatgttcaaatatcatttctcttt 10711733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 38572121 - 38572052
Alignment:
Q  147 agtagtgatatttgtataaccattt-ataacaattttggtgacaaccctcattttctctcttcttattgg 215  Q
    |||||||||||||||| |  || || ||||||| ||||||||||||| |  |||||||||||||||||||    
T  38572121 agtagtgatatttgtacattcaattgataacaactttggtgacaaccttgtttttctctcttcttattgg 38572052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 37601387 - 37601351
Alignment:
Q  146 gagtagtgatatttgtataaccatttataacaatttt 182  Q
    ||||||||||||||||| ||| |||||||||||||||    
T  37601387 gagtagtgatatttgtacaacaatttataacaatttt 37601351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 156091 - 156019
Alignment:
Q  143 gaagagtagtgatatttgtataaccatttataacaattttggtgacaaccctcattttctctcttcttattgg 215  Q
    ||||||||||||||| |||| ||||||||   |||| |||| ||||||| ||||||||||||||||| |||||    
T  156091 gaagagtagtgatatatgtacaaccatttgggacaactttgatgacaactctcattttctctcttctcattgg 156019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 144 - 215
Target Start/End: Complemental strand, 1804054 - 1803982
Alignment:
Q  144 aagagtagtgatatttgtataaccattt-ataacaattttggtgacaaccctcattttctctcttcttattgg 215  Q
    ||||||||||||||||||| | ||| || || |||| ||||||||||||| |  |||||||||||||||||||    
T  1804054 aagagtagtgatatttgtacatccaattgatgacaactttggtgacaaccttgtttttctctcttcttattgg 1803982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 6435219 - 6435149
Alignment:
Q  146 gagtagtgatatttgtataaccattt-ataacaattttggtgacaaccctcattttctctcttcttattgg 215  Q
    |||||||| |||||||| | ||| || || |||||||||||||||||| |  |||||||||||||||||||    
T  6435219 gagtagtggtatttgtacatccaattgatgacaattttggtgacaaccttgtttttctctcttcttattgg 6435149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 19788964 - 19789034
Alignment:
Q  145 agagtagtgatatttgtataaccatttataacaattttggtgacaaccctcattttctctcttcttattgg 215  Q
    ||||||||||||| |||| ||||||||   |||| |||| ||||||| || |||||||||||||| |||||    
T  19788964 agagtagtgatatatgtacaaccatttgggacaactttgatgacaactctgattttctctcttctcattgg 19789034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 330
Target Start/End: Complemental strand, 33651046 - 33651017
Alignment:
Q  301 aaaatagatgttcaaatatcatttctcttt 330  Q
    ||||||||||||||||||||||||||||||    
T  33651046 aaaatagatgttcaaatatcatttctcttt 33651017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 144 - 212
Target Start/End: Original strand, 11063976 - 11064044
Alignment:
Q  144 aagagtagtgatatttgtataaccatttataacaattttggtgacaaccctcattttctctcttcttat 212  Q
    ||||||||||||||||| | |||||||||  |||| ||||||||||||  ||||||||| |||| ||||    
T  11063976 aagagtagtgatatttgaacaaccatttaagacaactttggtgacaactttcattttctttctttttat 11064044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 15638313 - 15638243
Alignment:
Q  146 gagtagtgatatttgtataaccattt-ataacaattttggtgacaaccctcattttctctcttcttattgg 215  Q
    ||||||||||||||||| | ||| || || |||| ||||||||||||| |  |||||||||||||||||||    
T  15638313 gagtagtgatatttgtacatccaattgatgacaactttggtgacaaccttgtttttctctcttcttattgg 15638243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 327
Target Start/End: Original strand, 7654222 - 7654251
Alignment:
Q  298 tataaaatagatgttcaaatatcatttctc 327  Q
    ||||||||||||||||||||||||||||||    
T  7654222 tataaaatagatgttcaaatatcatttctc 7654251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 330
Target Start/End: Complemental strand, 27408180 - 27408151
Alignment:
Q  301 aaaatagatgttcaaatatcatttctcttt 330  Q
    ||||||||||||||||||||||||||||||    
T  27408180 aaaatagatgttcaaatatcatttctcttt 27408151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 32079296 - 32079223
Alignment:
Q  142 agaagagtagtgatatttgtataaccattt-ataacaattttggtgacaaccctcattttctctcttcttattg 214  Q
    ||||||||||||||||||||| |  ||||| ||||||| ||| ||||||||| |  |||||||| |||||||||    
T  32079296 agaagagtagtgatatttgtacatacatttcataacaactttagtgacaaccttgtttttctcttttcttattg 32079223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 41457991 - 41457950
Alignment:
Q  150 agtgatatttgtataaccatttataacaattttggtgacaac 191  Q
    |||||||||||||||||||||||| | |||||| ||||||||    
T  41457991 agtgatatttgtataaccatttatgataatttttgtgacaac 41457950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 328
Target Start/End: Original strand, 53654793 - 53654822
Alignment:
Q  299 ataaaatagatgttcaaatatcatttctct 328  Q
    ||||||||||||||||||||||||||||||    
T  53654793 ataaaatagatgttcaaatatcatttctct 53654822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 18568701 - 18568773
Alignment:
Q  144 aagagtagtgatatttgtataaccattt-ataacaattttggtgacaaccctcattttctctcttcttattgg 215  Q
    ||||||||||||||||||| | ||| || || |||| ||||||||||||| |  |||||| ||||||||||||    
T  18568701 aagagtagtgatatttgtacatccaattgatgacaactttggtgacaaccttgcttttctatcttcttattgg 18568773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 301 - 329
Target Start/End: Original strand, 51225570 - 51225598
Alignment:
Q  301 aaaatagatgttcaaatatcatttctctt 329  Q
    |||||||||||||||||||||||||||||    
T  51225570 aaaatagatgttcaaatatcatttctctt 51225598  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 215
Target Start/End: Original strand, 2597043 - 2597118
Alignment:
Q  141 aagaagagtagtgatatttgtataaccattt-ataacaattttggtgacaaccctcattttctctcttcttattgg 215  Q
    |||||||||||||||||||||| |  || || || |||| ||||||||||||| |  |||||||||||||||||||    
T  2597043 aagaagagtagtgatatttgtacattcaattgatgacaactttggtgacaaccttgtttttctctcttcttattgg 2597118  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 215
Target Start/End: Original strand, 8074614 - 8074683
Alignment:
Q  146 gagtagtgatatttgtataaccatttataacaattttggtgacaaccctcattttctctcttcttattgg 215  Q
    |||||||||||| |||| || ||| | | |||| |||| |||||||  ||||||||||||||||||||||    
T  8074614 gagtagtgatatatgtacaatcatatttgacaactttgatgacaactttcattttctctcttcttattgg 8074683  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 330
Target Start/End: Original strand, 6991854 - 6991882
Alignment:
Q  302 aaatagatgttcaaatatcatttctcttt 330  Q
    |||||||||||||||||||||||||||||    
T  6991854 aaatagatgttcaaatatcatttctcttt 6991882  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 8742568 - 8742497
Alignment:
Q  144 aagagtagtgatatttgtataaccattt-ataacaattttggtgacaaccctcattttctctcttcttattg 214  Q
    ||||||||||||||||||| | ||| || || |||| ||||||||||||| |  ||||||||||||||||||    
T  8742568 aagagtagtgatatttgtacatccaattgatgacaactttggtgacaaccttgtttttctctcttcttattg 8742497  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 215
Target Start/End: Complemental strand, 17500880 - 17500810
Alignment:
Q  145 agagtagtgatatttgtataaccatttataacaattttggtgacaaccctcattttctctcttcttattgg 215  Q
    ||||||||||||| |||| ||||||||   |||| |||| ||| |||  ||||||||||||||||||||||    
T  17500880 agagtagtgatatatgtacaaccatttgggacaactttgatgataactttcattttctctcttcttattgg 17500810  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 17552334 - 17552404
Alignment:
Q  145 agagtagtgatatttgtataaccatttataacaattttggtgacaaccctcattttctctcttcttattgg 215  Q
    ||||||||||||| |||| ||||||||   |||| |||| ||| |||  ||||||||||||||||||||||    
T  17552334 agagtagtgatatatgtacaaccatttgggacaactttgatgataactttcattttctctcttcttattgg 17552404  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 330
Target Start/End: Original strand, 3937155 - 3937184
Alignment:
Q  301 aaaatagatgttcaaatatcatttctcttt 330  Q
    ||||||||||||||||||||||||||||||    
T  3937155 aaaatagatgttcaaatatcatttctcttt 3937184  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 330
Target Start/End: Original strand, 21822644 - 21822673
Alignment:
Q  301 aaaatagatgttcaaatatcatttctcttt 330  Q
    ||||||||||||||||||||||||||||||    
T  21822644 aaaatagatgttcaaatatcatttctcttt 21822673  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 330
Target Start/End: Original strand, 44184604 - 44184633
Alignment:
Q  301 aaaatagatgttcaaatatcatttctcttt 330  Q
    ||||||||||||||||||||||||||||||    
T  44184604 aaaatagatgttcaaatatcatttctcttt 44184633  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 328
Target Start/End: Original strand, 47078282 - 47078311
Alignment:
Q  299 ataaaatagatgttcaaatatcatttctct 328  Q
    ||||||||||||||||||||||||||||||    
T  47078282 ataaaatagatgttcaaatatcatttctct 47078311  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 215
Target Start/End: Original strand, 49089053 - 49089122
Alignment:
Q  146 gagtagtgatatttgtataaccatttataacaattttggtgacaaccctcattttctctcttcttattgg 215  Q
    |||||||||||| |||| ||| |||| | |||| |||| |||||||  |||||||||||||||| |||||    
T  49089053 gagtagtgatatatgtacaacaatttctgacaactttgatgacaactttcattttctctcttctcattgg 49089122  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 327
Target Start/End: Original strand, 22638927 - 22638955
Alignment:
Q  299 ataaaatagatgttcaaatatcatttctc 327  Q
    |||||||||||||||||||||||||||||    
T  22638927 ataaaatagatgttcaaatatcatttctc 22638955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 141 - 213
Target Start/End: Complemental strand, 23761254 - 23761182
Alignment:
Q  141 aagaagagtagtgatatttgtataaccatttataacaattttggtgacaaccctcattttctctcttcttatt 213  Q
    ||||||||| ||||||||||||||||||| | |||||| |||| | |||||  | |||| |||||||| ||||    
T  23761254 aagaagagttgtgatatttgtataaccatatctaacaactttgataacaacttttatttactctcttcctatt 23761182  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 25614739 - 25614779
Alignment:
Q  175 acaattttggtgacaaccctcattttctctcttcttattgg 215  Q
    |||||||||||||||||| |  |||||||||||||||||||    
T  25614739 acaattttggtgacaaccttgtttttctctcttcttattgg 25614779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 23906874 - 23906945
Alignment:
Q  145 agagtagtgatatttgtataaccattt-ataacaattttggtgacaaccctcattttctctcttcttattgg 215  Q
    |||||||||||||||||| | ||| || || |||| ||||||||||||| |  |||||||||||||||||||    
T  23906874 agagtagtgatatttgtacatccaattgatgacaactttggtgacaaccttgcttttctctcttcttattgg 23906945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 215
Target Start/End: Complemental strand, 18713786 - 18713716
Alignment:
Q  145 agagtagtgatatttgtataaccatttataacaattttggtgacaaccctcattttctctcttcttattgg 215  Q
    ||||||||||||| |||| ||||||||  |||||||||  |||||||  ||||| |||||||||| |||||    
T  18713786 agagtagtgatatatgtacaaccatttggaacaattttaatgacaactttcattctctctcttctcattgg 18713716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 329
Target Start/End: Complemental strand, 49417603 - 49417573
Alignment:
Q  299 ataaaatagatgttcaaatatcatttctctt 329  Q
    |||||||||||||||||||||||||||||||    
T  49417603 ataaaatagatgttcaaatatcatttctctt 49417573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 215
Target Start/End: Original strand, 54233389 - 54233459
Alignment:
Q  146 gagtagtgatatttgtataaccattt-ataacaattttggtgacaaccctcattttctctcttcttattgg 215  Q
    ||||||||||||||||| | ||| || || |||| ||||||||||||| |  |||||||||||||||||||    
T  54233389 gagtagtgatatttgtacatccaattgatgacaactttggtgacaaccttgtttttctctcttcttattgg 54233459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 2009828 - 2009767
Alignment:
Q  154 atatttgtataaccatttataacaattttggtgacaaccctcattttctctcttcttattgg 215  Q
    ||||||||| | | |||||| |||| ||||||||||||| |  |||||||||||||||||||    
T  2009828 atatttgtacatcaatttatgacaactttggtgacaaccttgcttttctctcttcttattgg 2009767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 11574708 - 11574667
Alignment:
Q  174 aacaattttggtgacaaccctcattttctctcttcttattgg 215  Q
    ||||| ||||||||||||| | ||||||||||||||||||||    
T  11574708 aacaactttggtgacaaccttaattttctctcttcttattgg 11574667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 330
Target Start/End: Complemental strand, 46019488 - 46019459
Alignment:
Q  301 aaaatagatgttcaaatatcatttctcttt 330  Q
    ||||||||||||||||||||||||||||||    
T  46019488 aaaatagatgttcaaatatcatttctcttt 46019459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 330
Target Start/End: Original strand, 39671144 - 39671172
Alignment:
Q  302 aaatagatgttcaaatatcatttctcttt 330  Q
    |||||||||||||||||||||||||||||    
T  39671144 aaatagatgttcaaatatcatttctcttt 39671172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 301 - 329
Target Start/End: Original strand, 51465947 - 51465975
Alignment:
Q  301 aaaatagatgttcaaatatcatttctctt 329  Q
    |||||||||||||||||||||||||||||    
T  51465947 aaaatagatgttcaaatatcatttctctt 51465975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 3155184 - 3155115
Alignment:
Q  146 gagtagtgatatttgtataaccatttataacaattttggtgacaaccctcattttctctcttcttattgg 215  Q
    ||||||||||||||||| || ||| ||| |||| |||  |||||||  ||||||||||| ||||||||||    
T  3155184 gagtagtgatatttgtacaatcatatatgacaactttaatgacaactttcattttctctattcttattgg 3155115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 12779495 - 12779540
Alignment:
Q  146 gagtagtgatatttgtataaccatttataacaattttggtgacaac 191  Q
    ||||||||||||||| ||||||||||  ||||||||| ||||||||    
T  12779495 gagtagtgatatttgaataaccattttcaacaatttttgtgacaac 12779540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 209
Target Start/End: Complemental strand, 30301394 - 30301329
Alignment:
Q  144 aagagtagtgatatttgtataaccatttataacaattttggtgacaaccctcattttctctcttct 209  Q
    |||||||||||||| |||| |||||| | |||||| |||| |||||||  |||||| |||||||||    
T  30301394 aagagtagtgatatatgtacaaccatatgtaacaactttgatgacaactttcatttcctctcttct 30301329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 330
Target Start/End: Original strand, 43214104 - 43214133
Alignment:
Q  301 aaaatagatgttcaaatatcatttctcttt 330  Q
    ||||||||||||||||||||||||||||||    
T  43214104 aaaatagatgttcaaatatcatttctcttt 43214133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 301 - 329
Target Start/End: Original strand, 3640230 - 3640258
Alignment:
Q  301 aaaatagatgttcaaatatcatttctctt 329  Q
    |||||||||||||||||||||||||||||    
T  3640230 aaaatagatgttcaaatatcatttctctt 3640258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 301 - 329
Target Start/End: Original strand, 15953078 - 15953106
Alignment:
Q  301 aaaatagatgttcaaatatcatttctctt 329  Q
    |||||||||||||||||||||||||||||    
T  15953078 aaaatagatgttcaaatatcatttctctt 15953106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 144 - 215
Target Start/End: Complemental strand, 17489533 - 17489461
Alignment:
Q  144 aagagtagtgatatttgtataaccattt-ataacaattttggtgacaaccctcattttctctcttcttattgg 215  Q
    ||||||||||||||||||| | ||| || || |||| ||||||||||| | |  |||||||||||||||||||    
T  17489533 aagagtagtgatatttgtacatccaattgatgacaactttggtgacaatcttgtttttctctcttcttattgg 17489461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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