View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1605_high_11 (Length: 388)
Name: NF1605_high_11
Description: NF1605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1605_high_11 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 159 - 379
Target Start/End: Original strand, 1904819 - 1905039
Alignment:
| Q |
159 |
gattgttatataatcttcccggagagattatgaaattaaattgtttccataaactcgtcgaagctaggtctccaaaccatatgttgcttttcatcctcaa |
258 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1904819 |
gattgttttataatcttcccggagagattatgaaattaaattgtttccataaactcgtcgaagctaggtctccaaaccatatgttgcttttcatcctcaa |
1904918 |
T |
|
| Q |
259 |
ccaaccagcacaatttatgatttttcaacttatttgagtttagttcttttgctcatttctgatttcaatgattgttaaagggttcatttgtgtatatttt |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1904919 |
ccaaccagcacaatttatgatttttcaacttatttgagtttagttcttttgctcatttctgatttcaatgattgttaaagtgttcatttgtgtatatttt |
1905018 |
T |
|
| Q |
359 |
taatgcattttgcagtataat |
379 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
1905019 |
taatgcattttgcagtataat |
1905039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 159 - 379
Target Start/End: Original strand, 1909052 - 1909272
Alignment:
| Q |
159 |
gattgttatataatcttcccggagagattatgaaattaaattgtttccataaactcgtcgaagctaggtctccaaaccatatgttgcttttcatcctcaa |
258 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1909052 |
gattgttttataatcttcccggagagattatgaaattaaattgtttccataaactcgtcgaagctaggtctccaaaccatatgttgcttttcatcctcaa |
1909151 |
T |
|
| Q |
259 |
ccaaccagcacaatttatgatttttcaacttatttgagtttagttcttttgctcatttctgatttcaatgattgttaaagggttcatttgtgtatatttt |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1909152 |
ccaaccagcacaatttatgatttttcaacttatttgagtttagttcttttgctcatttctgatttcaatgattgttaaagtgttcatttgtgtatatttt |
1909251 |
T |
|
| Q |
359 |
taatgcattttgcagtataat |
379 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
1909252 |
taatgcattttgcagtataat |
1909272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 1904668 - 1904759
Alignment:
| Q |
1 |
cctattatacggtatgttatccggtttagaccgtgtttgaataaacaatttagctaaacatttatagcataaatgcttattgtatgagtgat |
92 |
Q |
| |
|
|||||||||||| |||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1904668 |
cctattatacggcatgttatcgcgtttagatcgtgtttgaataaacaacttagctaaacatttatagcataaatgcttatcgtatgagtgat |
1904759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 1908901 - 1908992
Alignment:
| Q |
1 |
cctattatacggtatgttatccggtttagaccgtgtttgaataaacaatttagctaaacatttatagcataaatgcttattgtatgagtgat |
92 |
Q |
| |
|
|||||||||||| |||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1908901 |
cctattatacggcatgttatcgcgtttagatcgtgtttgaataaacaacttagctaaacatttatagcataaatgcttatcgtatgagtgat |
1908992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University