View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1605_high_12 (Length: 370)
Name: NF1605_high_12
Description: NF1605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1605_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 3 - 273
Target Start/End: Complemental strand, 30166857 - 30166587
Alignment:
| Q |
3 |
atataatcaaccttgcataaaagttacatcagtcggcatcagagaactggtcatgcaagattacaagttgctattacactttgcaaaattaatttgaatc |
102 |
Q |
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| T |
30166857 |
atataatcaaccttgcataaaagttacatcagtcggcatcagagaactggtcatgcaagattacaagttgctattacactttgcaaaattaatttgaatt |
30166758 |
T |
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| Q |
103 |
aggaatttttaatcgattatttgataaatgtttatgatactacaccaaatttgtgataacatattgcctaaaaactaacggtcttaaccgtaataataat |
202 |
Q |
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| T |
30166757 |
gggaatttttaatcgattatttgataaatgtttatgacactacaccaaatttgtgataacatattgcctaaaaactaacgttcttaaccgtaataataat |
30166658 |
T |
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| Q |
203 |
ttgtttttggggaatgctaaagggcacaagttaatgcatctaatatagaaatgatttgttggaattcgtgc |
273 |
Q |
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| T |
30166657 |
ttgtttttggggaatgctaaagggcacaagttaatgcatcaaatatagaaatgatttgttggaattcgtgc |
30166587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 43 - 175
Target Start/End: Complemental strand, 30062709 - 30062577
Alignment:
| Q |
43 |
agagaactggtcatgcaagattacaagttgctattacactttgcaaaattaatttgaatcaggaatttttaatcgattatttgataaatgtttatgatac |
142 |
Q |
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| T |
30062709 |
agagaactcgtcatgcaagattacaagttgctatcagacttcgcaaaatcaattttaatcggaaatttttaatggatgatttgataaatgttagtgacac |
30062610 |
T |
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| Q |
143 |
tacaccaaatttgtgataacatattgcctaaaa |
175 |
Q |
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| T |
30062609 |
tacaccaaatttgcgataacttattgcctaaaa |
30062577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 43 - 209
Target Start/End: Complemental strand, 30006019 - 30005854
Alignment:
| Q |
43 |
agagaactggtcatgcaagattacaagttgctattacactttgcaaaattaatttgaatcaggaatttttaatcgattatttgataaatgtttatgatac |
142 |
Q |
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|||||||| |||||||||||||||||||| |||| | |||| ||||||| ||||| |||||| ||||| |||| ||| |||||||||||| ||| || |
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| T |
30006019 |
agagaactcgtcatgcaagattacaagttactatcagacttcgcaaaatcaattttaatcagaaatttgtaatggatgatttgataaatgcaagtgacac |
30005920 |
T |
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| Q |
143 |
tacaccaaatttgtgataacatattgcctaaaaactaacggtcttaaccgtaataataatttgtttt |
209 |
Q |
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| T |
30005919 |
tgcaccaaatttgcgataacttattgcct-aaaattaatggtcttaaccgtgataacaagttgtttt |
30005854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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