View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1605_high_25 (Length: 276)

Name: NF1605_high_25
Description: NF1605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1605_high_25
NF1605_high_25
[»] chr5 (1 HSPs)
chr5 (1-258)||(5834347-5834605)
[»] chr1 (3 HSPs)
chr1 (123-257)||(10464361-10464495)
chr1 (123-257)||(43734013-43734147)
chr1 (123-257)||(50672870-50673004)
[»] chr8 (2 HSPs)
chr8 (123-257)||(25863281-25863415)
chr8 (123-259)||(16346663-16346802)
[»] chr3 (1 HSPs)
chr3 (123-259)||(5912098-5912234)


Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 5834347 - 5834605
Alignment:
Q  1 ataacaaaacattgtgttaacgttttcttcttcttaacataatacattcattatgttattagaaactgttaaaattttgataggcttaattttagcttgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5834347 ataacaaaacattgtgttaacgttttcttcttcttaacataatacattcattatgttattagaaactgttaaaattttgataggcttaattttagcttgg 5834446  T
Q  101 ttttaaatatcaatgtcaaccctagtgtggagttgta-ttttttgttgggagtatctatagatgttccgtataaatgcggcaccttgatttgttctgatt 199  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||  | ||    
T  5834447 ttttaaatatcaatgtcaaccctagtgtggagttatatttttttgttgggagtatctatagatgtttcgtataaatgcggcatcttaatttgtttcggtt 5834546  T
Q  200 ttctttgttttatctgcgagcagtaccgttttagtacatctcgtcgtgaataatattag 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5834547 ttctttgttttatctgcgagcagtaccgttttagtacatctcgtcgtgaataatattag 5834605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 123 - 257
Target Start/End: Complemental strand, 10464495 - 10464361
Alignment:
Q  123 tagtgtggagttgtattttttgttgggagtatctatagatgttccgtataaatgcggcaccttgatttgttctgattttctttgttttatctgcgagcag 222  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10464495 tagtgtggagttgtattttttgttgggagtatctataggtgttccgtataaatgcggcaccttgatttgttctgattttctttgttttatccgcgagcag 10464396  T
Q  223 taccgttttagtacatctcgtcgtgaataatatta 257  Q
    |||||||||||||||||||||||||||||||||||    
T  10464395 taccgttttagtacatctcgtcgtgaataatatta 10464361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 123 - 257
Target Start/End: Complemental strand, 43734147 - 43734013
Alignment:
Q  123 tagtgtggagttgtattttttgttgggagtatctatagatgttccgtataaatgcggcaccttgatttgttctgattttctttgttttatctgcgagcag 222  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  43734147 tagtgtggagttgtattttttgttgggagtatctataggtgttccgtataaatgcggcaccttgatttgttctgattttctttgttttatccgcgagcag 43734048  T
Q  223 taccgttttagtacatctcgtcgtgaataatatta 257  Q
    |||||||||||||||||||||||||||||||||||    
T  43734047 taccgttttagtacatctcgtcgtgaataatatta 43734013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 123 - 257
Target Start/End: Complemental strand, 50673004 - 50672870
Alignment:
Q  123 tagtgtggagttgtattttttgttgggagtatctatagatgttccgtataaatgcggcaccttgatttgttctgattttctttgttttatctgcgagcag 222  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |    
T  50673004 tagtgtggagttttattttttgttgggagtatctataggtgttccgtataaatgcggcaccttgatttgttccgattttctttgttttatccgcgagctg 50672905  T
Q  223 taccgttttagtacatctcgtcgtgaataatatta 257  Q
    |||||||||||||||||||||||||||| ||||||    
T  50672904 taccgttttagtacatctcgtcgtgaatgatatta 50672870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 123 - 257
Target Start/End: Original strand, 25863281 - 25863415
Alignment:
Q  123 tagtgtggagttgtattttttgttgggagtatctatagatgttccgtataaatgcggcaccttgatttgttctgattttctttgttttatctgcgagcag 222  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  25863281 tagtgtggagttgtattttttgttgggagtatctataggtgttccgtataaatgcggcaccttgatttgttccgattttctttgttttatccgcgagcag 25863380  T
Q  223 taccgttttagtacatctcgtcgtgaataatatta 257  Q
    |||||||||||||||||||||||||||||||||||    
T  25863381 taccgttttagtacatctcgtcgtgaataatatta 25863415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 123 - 259
Target Start/End: Original strand, 16346663 - 16346802
Alignment:
Q  123 tagtgtggagttgtattttttgt--tgggagtatctatagatgttccgtataaatgcggcacctt-gatttgttctgattttctttgttttatctgcgag 219  Q
    ||||||||||||||| |||||||  |||  | |||| ||| |||||||| |||||| |||||||| ||||||||| | |||| ||||||| ||| || ||    
T  16346663 tagtgtggagttgtaatttttgtgttggtggcatctttaggtgttccgtctaaatgtggcaccttcgatttgttccggttttttttgtttaatccgcaag 16346762  T
Q  220 cagtaccgttttagtacatctcgtcgtgaataatattagt 259  Q
    | ||||||||||||||| ||||||||||||||||||||||    
T  16346763 cggtaccgttttagtacgtctcgtcgtgaataatattagt 16346802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 123 - 259
Target Start/End: Original strand, 5912098 - 5912234
Alignment:
Q  123 tagtgtggagttgtattttttgttgggagtatctatagatgttccgtataaatgcggcaccttgatttgttctgattttctttgttttatctgcgagcag 222  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||    
T  5912098 tagtgtggagttgtattttttgttgggagtatctataggtgttccgtataaatgcggcaccttgatttgttccggttttctttgttttatccgcgagcag 5912197  T
Q  223 taccgttttagtacatctcgtcgtgaataatattagt 259  Q
    ||||||||||||||||||| |||||||||||||||||    
T  5912198 taccgttttagtacatctcatcgtgaataatattagt 5912234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University