View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1605_high_31 (Length: 244)
Name: NF1605_high_31
Description: NF1605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1605_high_31 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 10220265 - 10220043
Alignment:
| Q |
7 |
ggcttgtcaagtaccaaatcaaaatctccagtttcctacnnnnnnntccacaacaccccaaatgatttcatctcgaaaagttaaaacttttaacattaaa |
106 |
Q |
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| T |
10220265 |
ggcttgtcaagttccaaatcaaactctccagtttcctacaaaaaaatccacaacaccccaaatgatttcatctcgaaaagttaaaacttttaacattaaa |
10220166 |
T |
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| Q |
107 |
acagaaaccccatcattaaaaataactaaacaacacacccccatcaaggccctgtttggataaacaactaagttaagtgcttaaggcatatgtataagct |
206 |
Q |
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| T |
10220165 |
acagaaaccccatcattaaaaataactaaacaacacacccccatcaaggccctgtttggataaacaactaagttaagtgcttaaggcatatgtataagct |
10220066 |
T |
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| Q |
207 |
atttttataaaagatagaataag |
229 |
Q |
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| T |
10220065 |
atttttataaaagatagaataag |
10220043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 189
Target Start/End: Complemental strand, 7480306 - 7480272
Alignment:
| Q |
155 |
gccctgtttggataaacaactaagttaagtgctta |
189 |
Q |
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| T |
7480306 |
gccctgtttggataaacaacttagttaagtgctta |
7480272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 188
Target Start/End: Complemental strand, 35972213 - 35972181
Alignment:
| Q |
156 |
ccctgtttggataaacaactaagttaagtgctt |
188 |
Q |
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| T |
35972213 |
ccctgtttggataaacaacttagttaagtgctt |
35972181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 189
Target Start/End: Complemental strand, 37308260 - 37308224
Alignment:
| Q |
153 |
aggccctgtttggataaacaactaagttaagtgctta |
189 |
Q |
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| T |
37308260 |
aggccctgtttggataaacaacttaattaagtgctta |
37308224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 49365987 - 49365947
Alignment:
| Q |
149 |
atcaaggccctgtttggataaacaactaagttaagtgctta |
189 |
Q |
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| T |
49365987 |
atcaaggctctgtttggataaacaacttagttaagcgctta |
49365947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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