View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1605_high_34 (Length: 239)
Name: NF1605_high_34
Description: NF1605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1605_high_34 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 48886143 - 48885919
Alignment:
| Q |
1 |
agattgcgaatgatgacggatcgtgcagtgcaatagagaatgttgttggttttgggatcgccggagatgagaatgccgcggccgcgttcggtggaaggtg |
100 |
Q |
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| T |
48886143 |
agattgcgaatgatgacggatcgtgcagtgcaatagagaatgttgttggttttgggatcgccggagatgagaatgccgcggccgcgttcggtggaaggtg |
48886044 |
T |
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| Q |
101 |
cgcaagcgtaggtttcagagagagttgccattgatggaattgagggtattgtgcgtgtagtgtgaagttgttatgctattgctatggtttctttcttcat |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48886043 |
cgcaagcgtaggtttcagagagagttgccattgttggaattgagggtattgtgcgtgtagtgtgaagttgttatgctattgctatggtttctttcttcat |
48885944 |
T |
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| Q |
201 |
attgttttgtggttgtagagagagt |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
48885943 |
attgttttgtggttgtagagagagt |
48885919 |
T |
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