View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1605_high_37 (Length: 236)
Name: NF1605_high_37
Description: NF1605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1605_high_37 |
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Alignment Details
Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 93 - 154
Target Start/End: Complemental strand, 42297099 - 42297038
Alignment:
| Q |
93 |
catttgccatttaaatatgatgtgcaccaaacaaactctcatccaccttcactatcacacac |
154 |
Q |
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| T |
42297099 |
catttgccatttaaatatgatgtgcaccaaacaaactctcatccaccttcactatcacacac |
42297038 |
T |
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Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 42297147 - 42297086
Alignment:
| Q |
1 |
caaaaagacgaatggatttaaggtatgtttgatgtgcatatataataacatttgccatttaa |
62 |
Q |
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| T |
42297147 |
caaacagacgaatggatttaaggtatgtttgatgtgcatatataataacatttgccatttaa |
42297086 |
T |
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