View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1605_high_8 (Length: 395)
Name: NF1605_high_8
Description: NF1605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1605_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 10220655 - 10220281
Alignment:
| Q |
1 |
tgacatattggaaagccaagtttcttaatcatgaatattatggtatcacactatggtatgaatttgcaatagcataaaaactggggggatgcgccatgca |
100 |
Q |
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| T |
10220655 |
tgacatattggaaagccaagtttcttaatcatgaatattatggtatcacactatggtatgaatttgcaatagcataaaaactgggggaatgcgccatgca |
10220556 |
T |
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| Q |
101 |
atgctgcagcattttcttcttacatgtaaataaaatataaatggtacgctatgaaatcagctaaattaaatatattgcgaatatcattcaacagaagaaa |
200 |
Q |
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| T |
10220555 |
atgctgcagcattttcttcttacatgtaaataaaatataaatggtacgctatgaaatcagctaaattaaatatattgcgaatatcattcaacagaagaaa |
10220456 |
T |
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| Q |
201 |
gatgaagaaaaacagatacatgatgcaatgcaaaagaagagaatcatacaagtaaagaatctccccagccttgacagtacactcaaacggtggagggcca |
300 |
Q |
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| T |
10220455 |
gatgaagaaaaacagatacatgatgcaatgcaaaagaagagaatcatacaagtaaagaatctccccagccttgacagtacactcaaacggtggagggcca |
10220356 |
T |
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| Q |
301 |
ttgaagtataaaggaaactttgaaatctcatcctccaagttctccggagaaggaaaagggttcacgctacaccaa |
375 |
Q |
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| T |
10220355 |
ttgaagtataaaggaaactttgaaatctcgtcctccaagttctccggagaaggaaaagggttcacactacaccaa |
10220281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 13853324 - 13853672
Alignment:
| Q |
1 |
tgacatattggaaagccaagtttcttaatcatgaatattatggtatcacactatggtatgaatttgcaatagcataaaaactggggggatgcgccatgca |
100 |
Q |
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| T |
13853324 |
tgacatattggaaaaccaagttgcttaatcatgaatattatgg------------gtatgaatttgcaatagcataaaaactgggggaatgtgccaagca |
13853411 |
T |
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| Q |
101 |
atgctgcagcattttcttcttacatgtaaataaaatataaatggtacgctatgaaatcagctaaattaaatatattgcgaatatcattcaacagaagaaa |
200 |
Q |
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| T |
13853412 |
atgctgcaacattttcttcttacttgtaaattaaatataaatggtacaatatgaaatcaggtaaattaaatatgttgagaatatcattcaacagaagaaa |
13853511 |
T |
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| Q |
201 |
gatgaagaaaaacagatacatgatgcaatgc-----aaaagaagagaatcatacaagtaaagaatctccccagccttgacagtacactcaaacggtggag |
295 |
Q |
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| T |
13853512 |
gattaagaaaaacagatacatgatgcaatgccaaggaaaagaagggaatcatacaagtaaagaatctccccattcttaacagtacattcaaacggtgaag |
13853611 |
T |
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| Q |
296 |
ggccattgaagtataaaggaaactttgaaatctcatcctccaagttctccggagaaggaaa |
356 |
Q |
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| T |
13853612 |
ggtcattgaagtataaaggaaactttgaaatctcatcctccaagttctccggagaaggaaa |
13853672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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