View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1605_low_10 (Length: 391)
Name: NF1605_low_10
Description: NF1605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1605_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 58 - 383
Target Start/End: Original strand, 13538916 - 13539241
Alignment:
| Q |
58 |
gatttaattatgaaaaccaaccaagttatgtgaaagtttgagcaaacttactttgaagtacaatcctagcttttcgtctttgctggccttttctttgtct |
157 |
Q |
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| T |
13538916 |
gatttaattatgaaaaccaaccaagttatgtgaaagtttgagcaaacttactttgaagtacaatcctagcttttcgtcttcgctggccttttctttgtct |
13539015 |
T |
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| Q |
158 |
ttcttcgacnnnnnnnngtctttgttgggattgccatagcaaacttcaagtagcttttcaacctcaaacacctcagaatcagatgaatcatccacaactt |
257 |
Q |
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| T |
13539016 |
ttcttcgacttttttttgtctttgttgggattgccatagcagacttgaagtagcttttcaacctcaaacacctcagaatcagatgaatcatccacaactt |
13539115 |
T |
|
| Q |
258 |
catcattagcttcttcaccatcatccatttcagaatctgaactttcagatccattcaatacaaactcttcacacagcttagcccactctttaagtaaact |
357 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13539116 |
catcattagcttcttcaccatcatccatatcagaatctgaactttcagatccattcaatacaaactcttcacacagcttagcccactctttaagtaaact |
13539215 |
T |
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| Q |
358 |
taagaagttttccgcagtttcatttc |
383 |
Q |
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| T |
13539216 |
taagaagttttcagcagtttcatttc |
13539241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 265 - 365
Target Start/End: Original strand, 31942271 - 31942371
Alignment:
| Q |
265 |
agcttcttcaccatcatccatttcagaatctgaactttcagatccattcaatacaaactcttcacacagcttagcccactctttaagtaaacttaagaag |
364 |
Q |
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| T |
31942271 |
agcttctttaccagcattcaaatcagaatctgtactttctgctccattcagtacaaactcgtcacaaagtttagcccactcttttagtagacttaaaaag |
31942370 |
T |
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| Q |
365 |
t |
365 |
Q |
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| T |
31942371 |
t |
31942371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 13538721 - 13538760
Alignment:
| Q |
18 |
aaagtgtcaatacacaagttaaagctacaagaaaagttgt |
57 |
Q |
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| T |
13538721 |
aaagtgtcaatacacaagttaaagctataagaaaagttgt |
13538760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 265 - 353
Target Start/End: Original strand, 9392641 - 9392729
Alignment:
| Q |
265 |
agcttcttcaccatcatccatttcagaatctgaactttcagatccattcaatacaaactcttcacacagcttagcccactctttaagta |
353 |
Q |
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| T |
9392641 |
agcttcttcagcagcattcaaatcagaatctgtactttctgcaccattcagtacaaactcgtcacaaagtttagcccactctttaagta |
9392729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 263
Target Start/End: Original strand, 9392577 - 9392627
Alignment:
| Q |
213 |
tttcaacctcaaacacctcagaatcagatgaatcatccacaacttcatcat |
263 |
Q |
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| T |
9392577 |
tttcaacctcaaatacctcagagtcaggtgaatcatccatagcttcatcat |
9392627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 277
Target Start/End: Original strand, 5642458 - 5642522
Alignment:
| Q |
213 |
tttcaacctcaaacacctcagaatcagatgaatcatccacaacttcatcattagcttcttcacca |
277 |
Q |
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|||| |||||||| |||||||| ||||||||| ||||| ||||||||| ||||||||||||| |
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| T |
5642458 |
tttctacctcaaatacctcagagtcagatgaactatccattgcttcatcatcagcttcttcacca |
5642522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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