View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1605_low_13 (Length: 358)
Name: NF1605_low_13
Description: NF1605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1605_low_13 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 16 - 358
Target Start/End: Complemental strand, 50226264 - 50225922
Alignment:
| Q |
16 |
cacagtgttgctaaacaaataatcacaacaatgtaaaatagaaactgcaaactatccatctttctaggaaagctagtagagcagttttgtcaaggcccag |
115 |
Q |
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| T |
50226264 |
cacagtgttgctaaacaaataatcacaacaatgtaaaatagaaactgcaaactatccatctttctaggaaagctagtagagcagttttgtcaaggcccag |
50226165 |
T |
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| Q |
116 |
ccaagaaaaatgtttgaatgaatcagtttctatgtctccccataaatttttatctaattgcctctgaattgtgggacttcaccaaattatcaaaaatgtt |
215 |
Q |
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| T |
50226164 |
ccaagaaaaatgtttgaatgaatcagtttctttgtctccccataaaattttatctaattgcctctgaattgtgggacttcaccaaattatcaaaaatgtt |
50226065 |
T |
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| Q |
216 |
atgtgcaagagccaaggtgaggctaaagatcataatcatatgatgttaatttccaaaagaagcagttgaattagcgaaaagatacatcaatttatccaag |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
50226064 |
atgtgcaagagccaaggtgaggctaaagatcataatcatatgatgttaatttccaaaagaaacagttgaattagcgaaaagatacatcaatttatccaag |
50225965 |
T |
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| Q |
316 |
gcttctggataaaacttcctggcaaataaataacaaggtcttt |
358 |
Q |
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| T |
50225964 |
gcttctggataaaacttcctggcaaataaataacaaggtcttt |
50225922 |
T |
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