View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1605_low_14 (Length: 353)
Name: NF1605_low_14
Description: NF1605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1605_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 156; Significance: 8e-83; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 116 - 279
Target Start/End: Complemental strand, 1904436 - 1904273
Alignment:
| Q |
116 |
gctttcaaaagcccttattattagttgatgatagcaatttcgtacatgtcggtccacaaaaaatcagttcggttttttgtaaaggtattttcagctcggt |
215 |
Q |
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| T |
1904436 |
gctttcaaaagcccttattattaattgatgatagcaatttcgtacatgtcggtccacaaaaaatcagtttggttttttgtaaaggtattttcagctcggt |
1904337 |
T |
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| Q |
216 |
tgaaaaccacatgatcagtgcactaaacctttatatcaatttggtttgaaacgaatcattatcg |
279 |
Q |
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| T |
1904336 |
tgaaaaccacatgatcagtgcactaaacctttatatcaatttggtttgaaacgaatcattatcg |
1904273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 116 - 279
Target Start/End: Complemental strand, 1908669 - 1908506
Alignment:
| Q |
116 |
gctttcaaaagcccttattattagttgatgatagcaatttcgtacatgtcggtccacaaaaaatcagttcggttttttgtaaaggtattttcagctcggt |
215 |
Q |
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| T |
1908669 |
gctttcaaaagcccttattattaattgatgatagcaatttcgtacatgtcggtccacaaaaaatcagtttggttttttgtaaaggtattttcagctcggt |
1908570 |
T |
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| Q |
216 |
tgaaaaccacatgatcagtgcactaaacctttatatcaatttggtttgaaacgaatcattatcg |
279 |
Q |
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| T |
1908569 |
tgaaaaccacatgatcagtgcactaaacctttatatcaatttggtttgaaacgaatcattatcg |
1908506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 1904571 - 1904480
Alignment:
| Q |
1 |
aacgaattaaaacgacattgaaaagccaaaatgtggctaatagttcaccaactgaactgaagttcggttatcatcgttgtgattcagtttgg |
92 |
Q |
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| T |
1904571 |
aacggattaaaacgacattgaaaagccaaaatgtgactaatagttcaccaactgaattgaagttcggttatcatcgttgtgattcagtttgg |
1904480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 1908804 - 1908713
Alignment:
| Q |
1 |
aacgaattaaaacgacattgaaaagccaaaatgtggctaatagttcaccaactgaactgaagttcggttatcatcgttgtgattcagtttgg |
92 |
Q |
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| T |
1908804 |
aacggattaaaacgacattgaaaagccaaaatgtgactaatagttcaccaactgaattgaagttcggttatcatcgttgtgattcagtttgg |
1908713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 117 - 205
Target Start/End: Complemental strand, 1899295 - 1899206
Alignment:
| Q |
117 |
ctttcaaaagcccttattattagtt-gatgatagcaatttcgtacatgtcggtccacaaaaaatcagttcggttttttgtaaaggtattt |
205 |
Q |
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| T |
1899295 |
ctttcaaaagcccttattattggtttgatgatagcaatgttgtacatgtcggtccacaaaaaatcaatacggtttttgttaaaggtattt |
1899206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 168 - 243
Target Start/End: Complemental strand, 1899195 - 1899119
Alignment:
| Q |
168 |
tccacaaaaaatcagttcggtttttt-gtaaaggtattttcagctcggttgaaaaccacatgatcagtgcactaaac |
243 |
Q |
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| T |
1899195 |
tccaaaaagaatcagttcggtttttttgtaaaggtattttcagctcggttgaaaaccacataatcggtgcactaaac |
1899119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 1904278 - 1904237
Alignment:
| Q |
293 |
ttatcgaactgttgtaacagttagattttccttcctaaaccg |
334 |
Q |
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| T |
1904278 |
ttatcgaactgttgtaacagttagattttccttcctaaaccg |
1904237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 1908511 - 1908470
Alignment:
| Q |
293 |
ttatcgaactgttgtaacagttagattttccttcctaaaccg |
334 |
Q |
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| T |
1908511 |
ttatcgaactgttgtaacagttagattttccttcctaaaccg |
1908470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 1899404 - 1899340
Alignment:
| Q |
26 |
ccaaaatgtggctaatagttcaccaactgaactgaagttcggttatcatcgttgtgattcagttt |
90 |
Q |
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| T |
1899404 |
ccaaaatgtgatcaatagttcaccaacagagctgaagttcggttattttcattttgattcagttt |
1899340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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