View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1605_low_15 (Length: 341)

Name: NF1605_low_15
Description: NF1605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1605_low_15
NF1605_low_15
[»] chr4 (4 HSPs)
chr4 (21-322)||(16010677-16010978)
chr4 (60-103)||(843150-843193)
chr4 (52-104)||(2796545-2796597)
chr4 (46-78)||(44412345-44412377)
[»] chr5 (4 HSPs)
chr5 (54-109)||(9895148-9895203)
chr5 (60-117)||(15086705-15086762)
chr5 (54-124)||(15086633-15086703)
chr5 (41-89)||(4206314-4206362)
[»] scaffold0330 (1 HSPs)
scaffold0330 (61-104)||(4362-4405)
[»] chr8 (2 HSPs)
chr8 (59-104)||(1592036-1592081)
chr8 (47-89)||(10170409-10170451)
[»] chr2 (5 HSPs)
chr2 (56-104)||(9956999-9957047)
chr2 (61-112)||(37232154-37232205)
chr2 (40-112)||(14268733-14268805)
chr2 (54-110)||(21186633-21186689)
chr2 (64-104)||(26144331-26144371)
[»] chr3 (3 HSPs)
chr3 (61-112)||(18268005-18268056)
chr3 (60-104)||(21768613-21768657)
chr3 (60-112)||(47542542-47542594)
[»] chr6 (2 HSPs)
chr6 (63-117)||(6074523-6074577)
chr6 (61-105)||(6074035-6074079)
[»] chr1 (3 HSPs)
chr1 (65-123)||(4796433-4796491)
chr1 (52-89)||(13759918-13759955)
chr1 (62-110)||(3148159-3148207)
[»] chr7 (2 HSPs)
chr7 (61-110)||(46179912-46179961)
chr7 (41-77)||(30177039-30177075)


Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 21 - 322
Target Start/End: Original strand, 16010677 - 16010978
Alignment:
Q  21 gacactggatgcgacactagcactcacacgacaacaccagtaataatttgagaaaataaattatttgaacacaatcacatgtgtaggtgttggacacaga 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  16010677 gacactggatgcgacactagcactcacacgacaacaccagtaataatttgagaaaataaatcatttgaacgcaatcacatgtgtaggtgttggacacaga 16010776  T
Q  121 cacgtctttgatcagaggtatcagtatagagactacaatataaaggtttgcatggtaaccgcaattacaatttcaacatcacaactgcaattgcagacgc 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16010777 cacgtctttgatcagaggtatcagtatagagactacaatataaaggtttgcatggtaaccgcaattacaatttcaacatcacaactgcaattgcagacgc 16010876  T
Q  221 atcgatggacattttttgcgattgcttaccttcaagaagtaggcatgctcctcaacaccaggtgtgttaaaagtattagaacgagcgcccatagctatta 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16010877 atcgatggacattttttgcgattgcttaccttcaagaagtaggcatgctcctcaacaccaggtgtgttaaaagtattagaacgagcgcccatagctatta 16010976  T
Q  321 ct 322  Q
    ||    
T  16010977 ct 16010978  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 843193 - 843150
Alignment:
Q  60 gtaataatttgagaaaataaattatttgaacacaatcacatgtg 103  Q
    |||||||||||||||||| ||||||||||||  |||||||||||    
T  843193 gtaataatttgagaaaatgaattatttgaacgtaatcacatgtg 843150  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 104
Target Start/End: Original strand, 2796545 - 2796597
Alignment:
Q  52 caacaccagtaataatttgagaaaataaattatttgaacacaatcacatgtgt 104  Q
    |||||||| ||||||||||||||||| ||||| |||||   ||||||||||||    
T  2796545 caacaccattaataatttgagaaaatgaattaattgaatttaatcacatgtgt 2796597  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 44412345 - 44412377
Alignment:
Q  46 acacgacaacaccagtaataatttgagaaaata 78  Q
    ||||| |||||||||||||||||||||||||||    
T  44412345 acacgtcaacaccagtaataatttgagaaaata 44412377  T

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Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 54 - 109
Target Start/End: Original strand, 9895148 - 9895203
Alignment:
Q  54 acaccagtaataatttgagaaaataaattatttgaacacaatcacatgtgtaggtg 109  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||| ||||    
T  9895148 acaccagtaataatttgagaaaataaattatttgaacgtaatcacatgtgttggtg 9895203  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 15086705 - 15086762
Alignment:
Q  60 gtaataatttgagaaaataaattatttgaacacaatcacatgtgtaggtgttggacac 117  Q
    |||||||||||||||| | ||||||||||||  |||||||||||| ||||| ||||||    
T  15086705 gtaataatttgagaaagtgaattatttgaacgtaatcacatgtgttggtgtcggacac 15086762  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 124
Target Start/End: Original strand, 15086633 - 15086703
Alignment:
Q  54 acaccagtaataatttgagaaaataaattatttgaacacaatcacatgtgtaggtgttggacacagacacg 124  Q
    |||||| ||||||||||||||| | ||||||||| ||  |||||||||||| |||||  ||||| ||||||    
T  15086633 acaccaataataatttgagaaagttaattatttgcacgtaatcacatgtgtgggtgtcagacactgacacg 15086703  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 4206314 - 4206362
Alignment:
Q  41 cactcacacgacaacaccagtaataatttgagaaaataaattatttgaa 89  Q
    |||| ||||| |||||||  |||||||||||||||||||| ||||||||    
T  4206314 cactgacacgtcaacaccgttaataatttgagaaaataaaatatttgaa 4206362  T

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Target: scaffold0330 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 104
Target Start/End: Original strand, 4362 - 4405
Alignment:
Q  61 taataatttgagaaaataaattatttgaacacaatcacatgtgt 104  Q
    ||||||||||||||||| |||||||| |||||||||||||||||    
T  4362 taataatttgagaaaatgaattatttaaacacaatcacatgtgt 4405  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 1592036 - 1592081
Alignment:
Q  59 agtaataatttgagaaaataaattatttgaacacaatcacatgtgt 104  Q
    |||||||||||||||||||| ||||||||||  |||||||||||||    
T  1592036 agtaataatttgagaaaatatattatttgaatgcaatcacatgtgt 1592081  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 89
Target Start/End: Complemental strand, 10170451 - 10170409
Alignment:
Q  47 cacgacaacaccagtaataatttgagaaaataaattatttgaa 89  Q
    |||| |||||||| ||||||||||||||||||||||| |||||    
T  10170451 cacgtcaacaccaataataatttgagaaaataaattaattgaa 10170409  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 9957047 - 9956999
Alignment:
Q  56 accagtaataatttgagaaaataaattatttgaacacaatcacatgtgt 104  Q
    |||||||||||||||| ||||||||||||||||||  ||| ||||||||    
T  9957047 accagtaataatttgacaaaataaattatttgaacgtaatgacatgtgt 9956999  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 37232205 - 37232154
Alignment:
Q  61 taataatttgagaaaataaattatttgaacacaatcacatgtgtaggtgttg 112  Q
    |||||| |||| ||||| ||||||||||||| |||||||||||| |||||||    
T  37232205 taataacttgataaaatgaattatttgaacataatcacatgtgtcggtgttg 37232154  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 112
Target Start/End: Complemental strand, 14268805 - 14268733
Alignment:
Q  40 gcactcacacgacaacaccagtaataatttgagaaaataaattatttgaacacaatcacatgtgtaggtgttg 112  Q
    ||||| ||||| ||||||| |||||||||||||||||| | ||| ||||||  ||| | |||||| |||||||    
T  14268805 gcactgacacgtcaacaccggtaataatttgagaaaatgacttaattgaacgtaatgatatgtgtcggtgttg 14268733  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 110
Target Start/End: Complemental strand, 21186689 - 21186633
Alignment:
Q  54 acaccagtaataatttgagaaaataaattatttgaacacaatcacatgtgtaggtgt 110  Q
    ||||| ||||| |||||||||| | ||||||||||||  |||||||||||| |||||    
T  21186689 acaccggtaatgatttgagaaagtgaattatttgaacgtaatcacatgtgtcggtgt 21186633  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 26144371 - 26144331
Alignment:
Q  64 taatttgagaaaataaattatttgaacacaatcacatgtgt 104  Q
    |||||||||||||| ||||||||||||  ||||||||||||    
T  26144371 taatttgagaaaattaattatttgaacggaatcacatgtgt 26144331  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 18268056 - 18268005
Alignment:
Q  61 taataatttgagaaaataaattatttgaacacaatcacatgtgtaggtgttg 112  Q
    ||||||||||||||||| ||||| ||||||  |||||||||||| |||||||    
T  18268056 taataatttgagaaaatgaattaattgaacgtaatcacatgtgtcggtgttg 18268005  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 21768613 - 21768657
Alignment:
Q  60 gtaataatttgagaaaataaattatttgaacacaatcacatgtgt 104  Q
    |||||||||||||||||| ||||||||||||  || |||||||||    
T  21768613 gtaataatttgagaaaatgaattatttgaacgtaaccacatgtgt 21768657  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 47542542 - 47542594
Alignment:
Q  60 gtaataatttgagaaaataaattatttgaacacaatcacatgtgtaggtgttg 112  Q
    |||||||||||||||||| || ||||||||   |||||||||||| |||||||    
T  47542542 gtaataatttgagaaaatgaactatttgaatgtaatcacatgtgtcggtgttg 47542594  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 117
Target Start/End: Original strand, 6074523 - 6074577
Alignment:
Q  63 ataatttgagaaaataaattatttgaacacaatcacatgtgtaggtgttggacac 117  Q
    ||||||||||||||| ||||| ||||||  |||||||||||| |||||| |||||    
T  6074523 ataatttgagaaaatgaattagttgaacgtaatcacatgtgttggtgttagacac 6074577  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 6074035 - 6074079
Alignment:
Q  61 taataatttgagaaaataaattatttgaacacaatcacatgtgta 105  Q
    ||||||||||||||||| ||||||||||||  ||||| |||||||    
T  6074035 taataatttgagaaaatgaattatttgaacgtaatcatatgtgta 6074079  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 123
Target Start/End: Original strand, 4796433 - 4796491
Alignment:
Q  65 aatttgagaaaataaattatttgaacacaatcacatgtgtaggtgttggacacagacac 123  Q
    ||||||| ||||||||||| ||||||| ||||||||||||  |||| |||||| |||||    
T  4796433 aatttgaaaaaataaattaattgaacataatcacatgtgtcagtgtcggacaccgacac 4796491  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 89
Target Start/End: Complemental strand, 13759955 - 13759918
Alignment:
Q  52 caacaccagtaataatttgagaaaataaattatttgaa 89  Q
    |||||||  |||||||||||||||||||||||||||||    
T  13759955 caacaccgataataatttgagaaaataaattatttgaa 13759918  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 3148159 - 3148207
Alignment:
Q  62 aataatttgagaaaataaattatttgaacacaatcacatgtgtaggtgt 110  Q
    |||||||||||||||||||||| || || | |||||||||||| |||||    
T  3148159 aataatttgagaaaataaattaatttaatataatcacatgtgtcggtgt 3148207  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 46179961 - 46179912
Alignment:
Q  61 taataatttgagaaaataaattatttgaacacaatcacatgtgtaggtgt 110  Q
    |||||| |||||||||||||||| ||||| | |||||||||||| |||||    
T  46179961 taataagttgagaaaataaattaattgaatataatcacatgtgtcggtgt 46179912  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 30177075 - 30177039
Alignment:
Q  41 cactcacacgacaacaccagtaataatttgagaaaat 77  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  30177075 cactgacacgtcaacaccagtaataatttgagaaaat 30177039  T

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