View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1605_low_18 (Length: 320)
Name: NF1605_low_18
Description: NF1605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1605_low_18 |
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| [»] scaffold0565 (1 HSPs) |
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Alignment Details
Target: scaffold0565 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: scaffold0565
Description:
Target: scaffold0565; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 4147 - 3848
Alignment:
| Q |
18 |
gaaaatggcgttatttggagttggtcaaataggttgcaccccaaatgcattggcccaaaacagcccagatggtagaacatgtgtagcaagaatcaattct |
117 |
Q |
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| T |
4147 |
gaaaatggcgttatttggagttggtcaaataggttgcaccccaaatgcattggcccaaaacagcccagatggtagaacatgtgtagcaagaatcaattct |
4048 |
T |
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| Q |
118 |
gcaaatcaattattcaacaatggattaagatctcttgttgatcaactcaataaccaacttcctgatgcaagattcatttatgtaaatgtttatggtatct |
217 |
Q |
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| T |
4047 |
gcaaatcaattattcaacaatggattaagatctcttgttgatcaactcaataaccaacttcctgatgcaagattcatttatgtaaatgtttatggtatct |
3948 |
T |
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| Q |
218 |
ttcaagacatcataaccagcccatcaacctatggtaattattttctccctaaaattatttaaattcacaattcatcaatttttcaagttatcaaaataat |
317 |
Q |
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| T |
3947 |
ttcaagacatcataaccagcccatcaacctatggtaattattttctccctaaaattatttaaattcacaattcatcaatttttcaagttatcaaaataat |
3848 |
T |
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Target: chr3 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 7615692 - 7615935
Alignment:
| Q |
18 |
gaaaatggcgttatttggagttggtcaaataggttgcaccccaaatgcattggcccaaaacagcccagatggtagaacatgtgtagcaagaatcaattct |
117 |
Q |
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| T |
7615692 |
gaaaatggctttatttgggattggtcaaataggttgcagtccaaatgaattagctcaaaacagtccagatggtaccacttgtgttgaaagaataaattct |
7615791 |
T |
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| Q |
118 |
gcaaatcaattattcaacaatggattaagatctcttgttgatcaactcaataaccaacttcctgatgcaagattcatttatgtaaatgtttatggtatct |
217 |
Q |
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| T |
7615792 |
gcaaaccaattatttaacaacggattgaaatctcttgttaatcaactcaacaatgagcttacggatgcaagattcatctatgtaaatacttatggtattt |
7615891 |
T |
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| Q |
218 |
ttcaagacatcataaccagcccatcaacctatggtaattatttt |
261 |
Q |
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| T |
7615892 |
ttcaagatatcataaacaacccatcatcatttggtaattatttt |
7615935 |
T |
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