View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1605_low_21 (Length: 308)
Name: NF1605_low_21
Description: NF1605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1605_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 35742480 - 35742753
Alignment:
| Q |
18 |
ctaacaaacaataagtgaagttcaagcaatctttcaaacccagagaaatcagatggaattgacaagtcaaatcctaaaaatttagagtacgtcaattcct |
117 |
Q |
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| T |
35742480 |
ctaacaaacaataagtgaagttcaagcaatctttcaaacccagagaaatcaggtggaattgacaagtcaaatcctaaaaacttagagtacgtcaattcct |
35742579 |
T |
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| Q |
118 |
tacaagggaggaggtcgacaatatatagcatttgatcgggatgtgtttcgtggttcacaagctcgagatgtttaatattcctctctgaccaaatcggaat |
217 |
Q |
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| T |
35742580 |
tacaagggag---gtcgacaatatatagcatttgatcgggatgtgtttcgtggttcacaagctcgagatgtttaatattcctctctgacaaaatcggaat |
35742676 |
T |
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| Q |
218 |
ccacttatcgaggtgttcaattgtgatctcaaatttgtagtcattagatatgaaaagaccaaacttatctatcggcc |
294 |
Q |
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| T |
35742677 |
ccacttatcgaggtgttcaattgtgatctcaaatttgtagtcattagatatgaaaagaccaaacttatctatcggcc |
35742753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 28 - 292
Target Start/End: Original strand, 35748858 - 35749116
Alignment:
| Q |
28 |
ataagtgaagttcaagcaatctttcaaacccagagaaatcagatggaattgacaagtcaaatcctaaaaatttagagtacgtcaattccttacaagggag |
127 |
Q |
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| T |
35748858 |
ataagtgaagattaagcaatcttttaaagcctcagaaatcatgtggaattgacaagttaaatccggaaaatttgaagtaagtcaactccttacaagcgag |
35748957 |
T |
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| Q |
128 |
gaggtcgacaatatatagcatttgatcgggatgtgtttcgtggttcacaagctcgagatgtttaatattcctctctgaccaaatcggaatccacttatcg |
227 |
Q |
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| T |
35748958 |
ga------cagtatatggcatttgatcgacatgtgttccgtagttcaaaagctcgagatgtttaatatccctcctagacaagaacggaatccacgtactg |
35749051 |
T |
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| Q |
228 |
aggtgttcaattgtgatctcaaatttgtagtcattagatatgaaaagaccaaacttatctatcgg |
292 |
Q |
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||| ||||||| |||||| || |||||||||| || |||||||||| |||||||| |||||| |
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| T |
35749052 |
aggaattcaattatgatcttgaaattgtagtcataaggtatgaaaagatgaaacttatgtatcgg |
35749116 |
T |
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