View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1605_low_24 (Length: 284)
Name: NF1605_low_24
Description: NF1605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1605_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 20 - 271
Target Start/End: Original strand, 45270044 - 45270295
Alignment:
| Q |
20 |
cagtcttcggtccagcatcgagccatatactggcggtgtatttggtagcctcgctcctgctaatgacacccttataacccttccacttgaccctcctcgc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45270044 |
cagtcttcggtccagcatcgagccatatactggcggtgtatttggtagcctcgctcctgctaatgacacccttataacccttccacttgaccctcctcgc |
45270143 |
T |
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| Q |
120 |
aacattggcaccaggtccagtgttggcatactctgcaaagtaacacgtgttttcataatgtttttctggcttgtttggttcttctggccaagtggtccat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45270144 |
aacattggcaccaggtccagtgttggcatactctgcaaagtaacacgtgttttcatgatgtttttctggcttgttttgttcttctggccaagtggtccat |
45270243 |
T |
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| Q |
220 |
ccatcttgatgaatcaaatcaccaattgtggattccatgatgactgcctttg |
271 |
Q |
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| T |
45270244 |
ccatcttgatgaataaaatcaccaattgtggattccatgatgactgcctttg |
45270295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 28 - 170
Target Start/End: Original strand, 45273602 - 45273744
Alignment:
| Q |
28 |
ggtccagcatcgagccatatactggcggtgtatttggtagcctcgctcctgctaatgacacccttataacccttccacttgaccctcctcgcaacattgg |
127 |
Q |
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| T |
45273602 |
ggtccagcttggagccatataccagctgtgaatttgttagcctcggccctgctaatgacaccgtgataacccttccacttgaccctcctcgcaacattgg |
45273701 |
T |
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| Q |
128 |
caccaggtccagtgttggcatactctgcaaagtaacacgtgtt |
170 |
Q |
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| T |
45273702 |
caccaggtccggtgtttgcatactctgcatagtaacatgtgtt |
45273744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 28 - 170
Target Start/End: Original strand, 45281846 - 45281988
Alignment:
| Q |
28 |
ggtccagcatcgagccatatactggcggtgtatttggtagcctcgctcctgctaatgacacccttataacccttccacttgaccctcctcgcaacattgg |
127 |
Q |
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|||||||| | ||||||||||| || ||| ||||| |||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
45281846 |
ggtccagcttggagccatataccagctgtgaatttgttagcctcggccctgctaatgacaccgtgataacccttccacttgaccctcctcgcaacattgg |
45281945 |
T |
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| Q |
128 |
caccaggtccagtgttggcatactctgcaaagtaacacgtgtt |
170 |
Q |
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| T |
45281946 |
caccaggtccggtgtttgcatactctgcatagtaacatgtgtt |
45281988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 28 - 181
Target Start/End: Original strand, 45293186 - 45293339
Alignment:
| Q |
28 |
ggtccagcatcgagccatatactggcggtgtatttggtagcctcgctcctgctaatgacacccttataacccttccacttgaccctcctcgcaacattgg |
127 |
Q |
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|||||||| | |||||||| || || ||| |||||||||||||| |||||||||| |||| | ||||||||||||||||| |||||| |||| ||||| |
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| T |
45293186 |
ggtccagcttggagccataaaccagcagtgaatttggtagcctcggccctgctaatggcaccgtgataacccttccacttgatcctcctggcaatattgg |
45293285 |
T |
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| Q |
128 |
caccaggtccagtgttggcatactctgcaaagtaacacgtgttttcataatgtt |
181 |
Q |
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| T |
45293286 |
caccaggtccagtgttggcgtactctgcatagtaacatgtgttttcaaaatgtt |
45293339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 28 - 181
Target Start/End: Original strand, 45302146 - 45302299
Alignment:
| Q |
28 |
ggtccagcatcgagccatatactggcggtgtatttggtagcctcgctcctgctaatgacacccttataacccttccacttgaccctcctcgcaacattgg |
127 |
Q |
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|||||||| | |||||||| || || ||| |||||||||||||| |||||||||| |||| | ||||||||||||||||| |||||| |||| ||||| |
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| T |
45302146 |
ggtccagcttggagccataaaccagcagtgaatttggtagcctcggccctgctaatggcaccgtgataacccttccacttgatcctcctggcaatattgg |
45302245 |
T |
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| Q |
128 |
caccaggtccagtgttggcatactctgcaaagtaacacgtgttttcataatgtt |
181 |
Q |
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||||||||||||||||||| ||||||||| ||||||| ||||||||| |||||| |
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| T |
45302246 |
caccaggtccagtgttggcgtactctgcatagtaacatgtgttttcaaaatgtt |
45302299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 197 - 273
Target Start/End: Original strand, 45273753 - 45273829
Alignment:
| Q |
197 |
gttcttctggccaagtggtccatccatcttgatgaatcaaatcaccaattgtggattccatgatgactgcctttgct |
273 |
Q |
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||||| || ||||| |||||||||||||| ||||||| ||||||||||| ||||||||||||| ||| | ||||||| |
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| T |
45273753 |
gttctccttgccaaatggtccatccatctggatgaatgaaatcaccaatggtggattccatgacgacagtctttgct |
45273829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 197 - 273
Target Start/End: Original strand, 45281997 - 45282073
Alignment:
| Q |
197 |
gttcttctggccaagtggtccatccatcttgatgaatcaaatcaccaattgtggattccatgatgactgcctttgct |
273 |
Q |
| |
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||||| || ||||| |||||||||||||| ||||||| ||||||||||| ||||||||||||| ||| | ||||||| |
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| T |
45281997 |
gttctccttgccaaatggtccatccatctggatgaatgaaatcaccaatggtggattccatgacgacagtctttgct |
45282073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 273
Target Start/End: Original strand, 45293346 - 45293413
Alignment:
| Q |
206 |
gccaagtggtccatccatcttgatgaatcaaatcaccaattgtggattccatgatgactgcctttgct |
273 |
Q |
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|||||| ||||||||||||| ||||||| ||||||||||| ||||||||||||| ||| | ||||||| |
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| T |
45293346 |
gccaaggggtccatccatctggatgaataaaatcaccaatggtggattccatgacgaccgtctttgct |
45293413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 273
Target Start/End: Original strand, 45302306 - 45302373
Alignment:
| Q |
206 |
gccaagtggtccatccatcttgatgaatcaaatcaccaattgtggattccatgatgactgcctttgct |
273 |
Q |
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|||||| ||||||||||||| ||||||| ||||||||||| ||||||||||||| ||| | ||||||| |
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| T |
45302306 |
gccaaggggtccatccatctggatgaataaaatcaccaatggtggattccatgacgaccgtctttgct |
45302373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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