View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1605_low_25 (Length: 279)
Name: NF1605_low_25
Description: NF1605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1605_low_25 |
 | |
|
| [»] scaffold0531 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 33826649 - 33826916
Alignment:
| Q |
1 |
actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaacacttactaagatatttaagaaaaacggcta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||| |
|
|
| T |
33826649 |
actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaaagacta |
33826748 |
T |
|
| Q |
101 |
ttattgatcataagataaagaaaaacaattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacata |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33826749 |
ttattgatcataagataaagaaaaacgattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacata |
33826848 |
T |
|
| Q |
201 |
ttttagccatacaaactctcaaatttagcagcactacacacaacccttgactacttctatcagttcat |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
33826849 |
ttttagccatacaaactctcaaatttagcagcactacacacaatccttgactacttctatcagttcat |
33826916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 2416548 - 2416815
Alignment:
| Q |
1 |
actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaacacttactaagatatttaagaaaaacggcta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||| |
|
|
| T |
2416548 |
actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaaagacta |
2416647 |
T |
|
| Q |
101 |
ttattgatcataagataaagaaaaacaattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacata |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2416648 |
ttattgatcataagataaagaaaaacgattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacata |
2416747 |
T |
|
| Q |
201 |
ttttagccatacaaactctcaaatttagcagcactacacacaacccttgactacttctatcagttcat |
268 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2416748 |
ttttagccatacaaactctcaaatttaacagcactacacacaatccttgactacttctatcagttcat |
2416815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 8 - 268
Target Start/End: Complemental strand, 39878812 - 39878552
Alignment:
| Q |
8 |
ttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaacacttactaagatatttaagaaaaacggctattattga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| | |||||||||| |
|
|
| T |
39878812 |
ttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaatacatactaagatatttaagaaaaaagactattattga |
39878713 |
T |
|
| Q |
108 |
tcataagataaagaaaaacaattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacatattttagc |
207 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
39878712 |
tcataagataaagaaaaatgattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttactctcaaggtataaactacatattttagc |
39878613 |
T |
|
| Q |
208 |
catacaaactctcaaatttagcagcactacacacaacccttgactacttctatcagttcat |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
39878612 |
catacaaactctcaaatttagcagcactacacacaatccttgactacttctatcaattcat |
39878552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 39348577 - 39348310
Alignment:
| Q |
1 |
actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaacacttactaagatatttaagaaaaacggcta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| | ||| |
|
|
| T |
39348577 |
actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagagaaaagacta |
39348478 |
T |
|
| Q |
101 |
ttattgatcataagataaagaaaaacaattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacata |
200 |
Q |
| |
|
|||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
39348477 |
ttattgatcagaagataaagaaaaacgatcgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaatgtataaattacata |
39348378 |
T |
|
| Q |
201 |
ttttagccatacaaactctcaaatttagcagcactacacacaacccttgactacttctatcagttcat |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
39348377 |
ttttagccatacaaactctcaaatttagcagcactacacacaatccttgactacttctatcagctcat |
39348310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 2416500 - 2416547
Alignment:
| Q |
1 |
actcatgttcaatgacatgataataataatttgaatcaaaacaaatac |
48 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2416500 |
actcatgttcaatgacatgataataataatttgaatcaaaacaaatac |
2416547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 33826601 - 33826648
Alignment:
| Q |
1 |
actcatgttcaatgacatgataataataatttgaatcaaaacaaatac |
48 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33826601 |
actcatgttcaatgacatgataataataatttgaatcaaaacaaatac |
33826648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 39878867 - 39878820
Alignment:
| Q |
1 |
actcatgttcaatgacatgataataataatttgaatcaaaacaaatac |
48 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39878867 |
actcatgttcaatgacatgataataataatttgaatcaaaacaaatac |
39878820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 16652668 - 16652401
Alignment:
| Q |
1 |
actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaacacttactaagatatttaagaaaaacggcta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||| |
|
|
| T |
16652668 |
actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaaagacta |
16652569 |
T |
|
| Q |
101 |
ttattgatcataagataaagaaaaacaattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacata |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16652568 |
ttattgatcataagataaagaaaaacgattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacata |
16652469 |
T |
|
| Q |
201 |
ttttagccatacaaactctcaaatttagcagcactacacacaacccttgactacttctatcagttcat |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
16652468 |
ttttagccatacaaactctcaaatttagcagcactacacacaatccttgactacttctatcagttcat |
16652401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 7604966 - 7605233
Alignment:
| Q |
1 |
actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaacacttactaagatatttaagaaaaacggcta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| | ||| |
|
|
| T |
7604966 |
actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaatatttactaagatatttaagaaaaaagacta |
7605065 |
T |
|
| Q |
101 |
ttattgatcataagataaagaaaaacaattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacata |
200 |
Q |
| |
|
||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7605066 |
ttattgatcattagttaaagaaaaacgattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtatacactacata |
7605165 |
T |
|
| Q |
201 |
ttttagccatacaaactctcaaatttagcagcactacacacaacccttgactacttctatcagttcat |
268 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7605166 |
ttttagccatacaaactctcaaatttaacagcactacacacaatccttgactacttctatcagttcat |
7605233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 9061757 - 9061490
Alignment:
| Q |
1 |
actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaacacttactaagatatttaagaaaaacggcta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||| |
|
|
| T |
9061757 |
actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaaagacta |
9061658 |
T |
|
| Q |
101 |
ttattgatcataagataaagaaaaacaattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacata |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9061657 |
ttattgatcataagataaagaaaaacgattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacata |
9061558 |
T |
|
| Q |
201 |
ttttagccatacaaactctcaaatttagcagcactacacacaacccttgactacttctatcagttcat |
268 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
9061557 |
ttttagccatacaaactctcaaatttaacagcactacacacaatccttgactacttctatcagttcat |
9061490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 9061805 - 9061758
Alignment:
| Q |
1 |
actcatgttcaatgacatgataataataatttgaatcaaaacaaatac |
48 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9061805 |
actcatgttcaatgacatgataataataatttgaatcaaaacaaatac |
9061758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 27018663 - 27018616
Alignment:
| Q |
1 |
actcatgttcaatgacatgataataataatttgaatcaaaacaaatac |
48 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27018663 |
actcatgttcaatgacatgataataataatttgaatcaaaacaaatac |
27018616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 24773669 - 24773936
Alignment:
| Q |
1 |
actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaacacttactaagatatttaagaaaaacggcta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||| |
|
|
| T |
24773669 |
actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaaagacta |
24773768 |
T |
|
| Q |
101 |
ttattgatcataagataaagaaaaacaattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacata |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24773769 |
ttattgatcataagataaagaaaaacgattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacata |
24773868 |
T |
|
| Q |
201 |
ttttagccatacaaactctcaaatttagcagcactacacacaacccttgactacttctatcagttcat |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
24773869 |
ttttagccatacaaactctcaaatttagcagcactacacacaatccgtgactacttctatcagttcat |
24773936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 35350009 - 35349742
Alignment:
| Q |
1 |
actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaacacttactaagatatttaagaaaaacggcta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| | ||| |
|
|
| T |
35350009 |
actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagagaaaagacta |
35349910 |
T |
|
| Q |
101 |
ttattgatcataagataaagaaaaacaattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacata |
200 |
Q |
| |
|
|||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
35349909 |
ttattgatcagaagataaagaaaaacgatcgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaatgtataaattacata |
35349810 |
T |
|
| Q |
201 |
ttttagccatacaaactctcaaatttagcagcactacacacaacccttgactacttctatcagttcat |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
35349809 |
ttttagccatacaaactctcaaatttagcagcactacacacaatccttgactacttctatcagctcat |
35349742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 24773621 - 24773668
Alignment:
| Q |
1 |
actcatgttcaatgacatgataataataatttgaatcaaaacaaatac |
48 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24773621 |
actcatgttcaatgacatgataataataatttgaatcaaaacaaatac |
24773668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 27313888 - 27314155
Alignment:
| Q |
1 |
actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaacacttactaagatatttaagaaaaacggcta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||| |
|
|
| T |
27313888 |
actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaaagacta |
27313987 |
T |
|
| Q |
101 |
ttattgatcataagataaagaaaaacaattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacata |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27313988 |
ttattgatcataagataaagaaaaacgattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacata |
27314087 |
T |
|
| Q |
201 |
ttttagccatacaaactctcaaatttagcagcactacacacaacccttgactacttctatcagttcat |
268 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27314088 |
ttttagccatacaaactctcaaatttaacagcactacacacaatccttgactacttctatcagttcat |
27314155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 137 - 268
Target Start/End: Original strand, 10788791 - 10788922
Alignment:
| Q |
137 |
cactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacatattttagccatacaaactctcaaatttagcagcacta |
236 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||| ||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10788791 |
cactaaatttatttatattaagtacaattattctattttttattctcaaggtataaattacatattttagccatacaaactcttaaatttagcagcacta |
10788890 |
T |
|
| Q |
237 |
cacacaacccttgactacttctatcagttcat |
268 |
Q |
| |
|
||||||| |||| | ||||||||||| ||||| |
|
|
| T |
10788891 |
cacacaatccttcattacttctatcaattcat |
10788922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 27313840 - 27313887
Alignment:
| Q |
1 |
actcatgttcaatgacatgataataataatttgaatcaaaacaaatac |
48 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27313840 |
actcatgttcaatgacatgataataataatttgaatcaaaacaaatac |
27313887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 2277086 - 2276819
Alignment:
| Q |
1 |
actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaacacttactaagatatttaagaaaaacggcta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| | ||| |
|
|
| T |
2277086 |
actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagagaaaagacta |
2276987 |
T |
|
| Q |
101 |
ttattgatcataagataaagaaaaacaattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacata |
200 |
Q |
| |
|
|||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
2276986 |
ttattgatcagaagataaagaaaaacgatcgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaatgtataaattacata |
2276887 |
T |
|
| Q |
201 |
ttttagccatacaaactctcaaatttagcagcactacacacaacccttgactacttctatcagttcat |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
2276886 |
ttttagccatacaaactctcaaatttagcagcactacacacaatccttgactacttctatcagctcat |
2276819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 920983 - 920727
Alignment:
| Q |
1 |
actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaacacttactaagatatttaagaaaaac--ggc |
98 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| | | |
|
|
| T |
920983 |
actcaagttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaaaaaaaaaaagac |
920884 |
T |
|
| Q |
99 |
tattattgatcataagataaagaaaaacaattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactaca |
198 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
920883 |
tattattgatcataagataaagaaaaacgattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactaca |
920784 |
T |
|
| Q |
199 |
tattttagccatacaaactctcaaatttagcagcactacacacaacccttgactact |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
920783 |
tattttagccatacaaactctcaaatttagcagcactacacacaatccttgactact |
920727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 921031 - 920984
Alignment:
| Q |
1 |
actcatgttcaatgacatgataataataatttgaatcaaaacaaatac |
48 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
921031 |
actcatgttcaatgtcatgataataataatttgaatcaaaacaaatac |
920984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 4014420 - 4014153
Alignment:
| Q |
1 |
actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaacacttactaagatatttaagaaaaacggcta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| | ||| |
|
|
| T |
4014420 |
actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagagaaaagacta |
4014321 |
T |
|
| Q |
101 |
ttattgatcataagataaagaaaaacaattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacata |
200 |
Q |
| |
|
|||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
4014320 |
ttattgatcagaagataaagaaaaacgatcgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaatgtataaattacata |
4014221 |
T |
|
| Q |
201 |
ttttagccatacaaactctcaaatttagcagcactacacacaacccttgactacttctatcagttcat |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
4014220 |
ttttagccatacaaactctcaaatttagcagcactacacacaatccttgactacttctatcagctcat |
4014153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 15197836 - 15198106
Alignment:
| Q |
1 |
actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaacacttactaagatatttaagaaaaacggcta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| | ||| |
|
|
| T |
15197836 |
actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaatacatactaagatatttaagaaaaaagacta |
15197935 |
T |
|
| Q |
101 |
ttattgatcataagataaagaaaaacaattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacata |
200 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15197936 |
ttattgatcataagataaagaaaaacgatcgagcctcactaaatttatttatatcaagtataatttttcagtttcttattctcaaggtataaactacata |
15198035 |
T |
|
| Q |
201 |
ttttagccatacaaactctcaaatttagcagc---actacacacaacccttgactacttctatcagttcat |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||| |
|
|
| T |
15198036 |
ttttagccatacaaactctcaaatttagcagcagtactacacacaatctttgactacttctatcagttcat |
15198106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 25880815 - 25880544
Alignment:
| Q |
1 |
actcatgttcaatgacatgataataataatttgaatcaaaa--caaatactttagttacaaccaaacaaaacacttactaagatatttaagaaaaacggc |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||| | | |
|
|
| T |
25880815 |
actcatgttcaatgacatgataataataatttgaatcaaaaaacaaatactttagttacaaccaaacaaaatactgactaagatatttaagaaaaaagac |
25880716 |
T |
|
| Q |
99 |
tattattgatcataagataaagaaaaacaattgagcctcactaaatttat--ttatatcaagtacaatttttctgtttcttattctcaaggtataaacta |
196 |
Q |
| |
|
|||||||||| | ||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||| || |
|
|
| T |
25880715 |
tattattgatgagaagataaagaaaaacgattaagcctcactaaatttatatttatatcaagtacaattattttgtttcttattctcaaggtataaatta |
25880616 |
T |
|
| Q |
197 |
catattttagccatacaaactctcaaatttagcagcactacacacaacccttgactacttctatcagttcat |
268 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
25880615 |
catattttagtcatacaaactctcaaatttagcagcactacacacaatccttgactacttctatcaattcat |
25880544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 38443651 - 38443473
Alignment:
| Q |
1 |
actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaacacttactaagatatttaagaaaaacggcta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||| |
|
|
| T |
38443651 |
actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaaagacta |
38443552 |
T |
|
| Q |
101 |
ttattgatcataagataaagaaaaacaattgagcctcactaaatttatttatatcaagtacaatttttc-tgtttctta |
178 |
Q |
| |
|
||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38443551 |
ttattgatcatcagttaaagaaaaacgattgagcctcactaaatttatttatatcaagtacaatttttcttgtttctta |
38443473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 38443699 - 38443652
Alignment:
| Q |
1 |
actcatgttcaatgacatgataataataatttgaatcaaaacaaatac |
48 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38443699 |
actcatgttcaatgacatgataataataatttgaatcaaaacaaatac |
38443652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 11174 - 11371
Alignment:
| Q |
1 |
actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagttacaaccaaacaaaacacttactaagatatttaagaaaaacggcta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| | ||| |
|
|
| T |
11174 |
actcatgttcaatgacatgataataataatttgaatcaaaacaaatactttagtcacaaccaaacaaaatacttactaagatatttaagaaaaaagacta |
11273 |
T |
|
| Q |
101 |
ttattgatcataagataaagaaaaacaattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactaca |
198 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11274 |
ttattgatcagaagataaagaaaaacgattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactaca |
11371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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