View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1605_low_3 (Length: 512)
Name: NF1605_low_3
Description: NF1605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1605_low_3 |
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| [»] scaffold0374 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 13 - 495
Target Start/End: Original strand, 24139849 - 24140327
Alignment:
| Q |
13 |
aatatcagcagtatcagtatcaaatgttaattgaaaaattagtcttgtatattaatgccttctcataatgctacattacaaagaatcattcaaagtaaag |
112 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24139849 |
aataccagcagtatcagtatcaaatgttaattgaaaaattagtcttgtat--taatgccttctcataatgctacattacaaagaatcattcaaagtaaag |
24139946 |
T |
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| Q |
113 |
tgcaccaatgttcatctcatgcagtagcccgtcacatgatatgataaagtaaagtgcactcttcgagtcaatgtcaaaccccaaaatttaccctctaaac |
212 |
Q |
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| T |
24139947 |
tgcaccaatgttcatctcatgcagtagcccgtcacatgatatgataaagtaaagtgcactcttcgagtcggtgtcaaaccccaaaatttactctctaaac |
24140046 |
T |
|
| Q |
213 |
atttattattttcttgatatctttccaagtctctaaagagttattatannnnnnnngatcagaaagtctctaaagagttacatatgaaactaaatttgct |
312 |
Q |
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||||||||||||||| |||||||| |||||||||||||||||||||| || || ||||||||||| |||||||||||||||||||||||||| |
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| T |
24140047 |
atttattattttcttaatatctttgcaagtctctaaagagttattat--tttttttgaacaaaaagtctctaaggagttacatatgaaactaaatttgct |
24140144 |
T |
|
| Q |
313 |
gttattactcctagcataaccaatgacttcaaaacaattttcttattattaatcgggtagtaacaattttgctaatcttgttgttattagatagtatcgt |
412 |
Q |
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||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
24140145 |
gttattactcctagcataaccaatgactttaaaacaattttcctattattaatcgggtagtaacaattttgctaatcttgttgttattagatagtatcct |
24140244 |
T |
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| Q |
413 |
aatccctttactttaacatcctcgtgataaaatcgcgggtccggtatctaacaatgtatcgtcttgatcaaagctatcatcac |
495 |
Q |
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| T |
24140245 |
aatccctttactttaacattgtcgtgataaaatcgcgggtccggtatctaacaatgtctcgtcttgatcaaagctatcatcac |
24140327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0374 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0374
Description:
Target: scaffold0374; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 152 - 257
Target Start/End: Complemental strand, 14726 - 14622
Alignment:
| Q |
152 |
tatgataaagtaaagtgcactcttcgagtcaatgtcaaaccccaaaatttaccctctaaacatttattattttcttgatatctttccaagtctctaaaga |
251 |
Q |
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|||||||| |||||||||||| ||||||||| || ||||| ||||| ||||| | ||||| ||||||| |||||||||| |||| ||||||||| ||| |
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| T |
14726 |
tatgataaggtaaagtgcacttttcgagtcagtgccaaactccaaattttactcactaaatttttatta-tttcttgataccttttaaagtctctacaga |
14628 |
T |
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| Q |
252 |
gttatt |
257 |
Q |
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||||| |
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| T |
14627 |
tttatt |
14622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 356 - 491
Target Start/End: Original strand, 1981766 - 1981895
Alignment:
| Q |
356 |
tattattaatcgggtagtaacaattttgctaatcttgttgttattagatagtatcgtaatccctttactttaacatcctcgtgataaaatcgcgggtccg |
455 |
Q |
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| T |
1981766 |
tattattaat-ggatagtaataatttttctaatcttattattaccggatagtaacgtaatcccttaactttagcatcgtcatg-----atcgcgggtcca |
1981859 |
T |
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| Q |
456 |
gtatctaacaatgtatcgtcttgatcaaagctatca |
491 |
Q |
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| T |
1981860 |
gtgtctaacaatgtctcctcttgaccaaagctatca |
1981895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 191
Target Start/End: Complemental strand, 21233153 - 21233111
Alignment:
| Q |
149 |
tgatatgataaagtaaagtgcactcttcgagtcaatgtcaaac |
191 |
Q |
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| T |
21233153 |
tgatacgataaagtaaagtgcactcttcgagtcagtgtcaaac |
21233111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 17454790 - 17454750
Alignment:
| Q |
157 |
taaagtaaagtgcactcttcgagtcaatgtcaaaccccaaa |
197 |
Q |
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| T |
17454790 |
taaagtaaagtgcactcttcgaatcaatgtcaaactccaaa |
17454750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 245
Target Start/End: Original strand, 29923631 - 29923719
Alignment:
| Q |
156 |
ataaagtaaagtgcactcttcgagtcaatgtcaaaccccaaaatttaccctctaaacatttattattttcttgatatctttccaagtctc |
245 |
Q |
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||||||| || |||||||||||||| | |||||||| ||||| ||||| | |||| | |||||| |||||||||| ||||| ||||||| |
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| T |
29923631 |
ataaagttaattgcactcttcgagttagtgtcaaactccaaattttactcattaaatacttatta-tttcttgatacctttcaaagtctc |
29923719 |
T |
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