View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1605_low_32 (Length: 248)
Name: NF1605_low_32
Description: NF1605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1605_low_32 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 13 - 248
Target Start/End: Complemental strand, 47663450 - 47663215
Alignment:
| Q |
13 |
caaaggggagaatattacaagcatcttaattgatattcatttttcatctccagaaataacataagctttgatttgaacgcacaattagaaaaactctcac |
112 |
Q |
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| T |
47663450 |
caaaggggagaatattacaagcatcttaattgatattcatttttcatctccagaaataacataagctttgatttgaacgcacaattagaaaaactctcac |
47663351 |
T |
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| Q |
113 |
atatgtaacattataatatatatcacttaccatgaaaataaagagacattgatcattgttcgtggacaagtacacttttcttccctttaccagtccttct |
212 |
Q |
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| T |
47663350 |
atatgtaacattataatatatatcacttaccatgaaaataaagagacattgatcattgttcgtggacaagtacacttttcttccctttaccagtccttct |
47663251 |
T |
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| Q |
213 |
cctgctggtggtaccgtcatggcggcgagtaccatc |
248 |
Q |
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| T |
47663250 |
cctgctggtggtaccgtcatggcggagagtaccatc |
47663215 |
T |
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