View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1605_low_37 (Length: 237)

Name: NF1605_low_37
Description: NF1605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1605_low_37
NF1605_low_37
[»] chr4 (5 HSPs)
chr4 (1-221)||(24476248-24476471)
chr4 (59-222)||(21823660-21823822)
chr4 (58-221)||(18553294-18553452)
chr4 (21-81)||(12424724-12424785)
chr4 (22-69)||(24924834-24924882)
[»] chr5 (7 HSPs)
chr5 (1-222)||(10235995-10236215)
chr5 (1-189)||(20646425-20646614)
chr5 (4-95)||(30985608-30985700)
chr5 (1-69)||(9423054-9423123)
chr5 (58-161)||(16809593-16809695)
chr5 (22-82)||(24309014-24309076)
chr5 (22-82)||(24364250-24364312)
[»] chr6 (7 HSPs)
chr6 (58-221)||(22259180-22259344)
chr6 (58-218)||(6038949-6039106)
chr6 (1-69)||(34992304-34992373)
chr6 (21-92)||(10163326-10163398)
chr6 (21-92)||(11744501-11744573)
chr6 (22-69)||(28712337-28712385)
chr6 (18-87)||(17352660-17352731)
[»] chr3 (11 HSPs)
chr3 (1-221)||(17132646-17132865)
chr3 (5-87)||(45279987-45280070)
chr3 (1-87)||(1745030-1745117)
chr3 (18-56)||(4022834-4022872)
chr3 (20-69)||(44450966-44451016)
chr3 (1-87)||(4026453-4026541)
chr3 (34-87)||(25321132-25321186)
chr3 (152-198)||(52496701-52496747)
chr3 (21-87)||(9101735-9101803)
chr3 (21-92)||(48896001-48896073)
chr3 (1-69)||(53589204-53589272)
[»] chr2 (4 HSPs)
chr2 (1-82)||(30999976-31000058)
chr2 (27-185)||(21625353-21625504)
chr2 (21-87)||(17162070-17162138)
chr2 (20-69)||(17636666-17636717)
[»] chr7 (7 HSPs)
chr7 (19-87)||(7948089-7948158)
chr7 (11-87)||(12468879-12468955)
chr7 (22-87)||(1545699-1545765)
chr7 (20-69)||(11994017-11994067)
chr7 (1-87)||(15682786-15682874)
chr7 (40-95)||(18084281-18084338)
chr7 (22-69)||(25621196-25621245)
[»] chr1 (8 HSPs)
chr1 (21-93)||(25018609-25018682)
chr1 (22-87)||(24633379-24633445)
chr1 (107-212)||(11110704-11110809)
chr1 (18-87)||(11821789-11821858)
chr1 (1-87)||(13962814-13962902)
chr1 (18-56)||(13966367-13966405)
chr1 (42-141)||(22785111-22785211)
chr1 (19-51)||(33379460-33379492)
[»] scaffold0608 (1 HSPs)
scaffold0608 (107-212)||(6141-6246)
[»] chr8 (13 HSPs)
chr8 (21-87)||(22450098-22450165)
chr8 (151-221)||(27814859-27814929)
chr8 (22-87)||(28291637-28291703)
chr8 (21-180)||(15340893-15341057)
chr8 (21-180)||(15429958-15430122)
chr8 (21-180)||(15521262-15521426)
chr8 (1-104)||(28862523-28862626)
chr8 (18-69)||(32352142-32352193)
chr8 (18-69)||(32368803-32368854)
chr8 (18-221)||(5892553-5892759)
chr8 (99-207)||(27816769-27816874)
chr8 (22-51)||(41652116-41652145)
chr8 (21-92)||(6017504-6017576)
[»] scaffold0148 (1 HSPs)
scaffold0148 (1-221)||(22950-23169)
[»] scaffold0431 (1 HSPs)
scaffold0431 (21-81)||(5190-5251)


Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 24476248 - 24476471
Alignment:
Q  1 ttcgacataaatcagtgaagaaaatgcaagtaaaag--acttaaaa-gtttaaacgcagtaacttaaagaaatgtaaattgcattacattgaaataaaat 97  Q
    ||||||| |||||||||||||||||||||||||||   |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  24476248 ttcgacagaaatcagtgaagaaaatgcaagtaaaaagaacttaaaaagtttaaacgcagtaacttaaagaaatgtaaattgcattgcattgaaataaaat 24476347  T
Q  98 gtggtttagcaaatcattacaaacattctatgactattttctctctacgcttagtactttgagtgtttgaattctgtaaatgagatttgtgatccgcttt 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24476348 gtggtttagcaaatcattacaaacattctatgactattttctctctaggcttagtactttgagtgtttgaattctgtaaatgagatttgtgatccgcttt 24476447  T
Q  198 tcctatgaaacactactatatata 221  Q
    ||||||||||||||||||||||||    
T  24476448 tcctatgaaacactactatatata 24476471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 222
Target Start/End: Original strand, 21823660 - 21823822
Alignment:
Q  59 acttaaagaaatgtaaattgcattacattgaaataaaatgtggtttagcaaatcattacaaacattctatgactattttctctctacgcttagtactttg 158  Q
    ||||||||||| |||||||||||| || | |||  ||| |||||| | |||||||||||| ||||||  ||||| |||  |||||||| || ||||||||    
T  21823660 acttaaagaaaagtaaattgcattgcact-aaagtaaaggtggttcaacaaatcattacatacattc--tgactcttt--tctctacg-ttggtactttg 21823753  T
Q  159 agtgtttgaattct-----gtaaatgagatttgtgatccgcttttcctatgaaacactactatatatat 222  Q
    ||||| ||||||||      ||||||||||||||||  || ||||||||||||| ||||||||||||||    
T  21823754 agtgtatgaattctataaattaaatgagatttgtgacacgtttttcctatgaaaaactactatatatat 21823822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 221
Target Start/End: Original strand, 18553294 - 18553452
Alignment:
Q  58 aacttaaagaaatgtaaattgcattacattgaaataaaatgtggtttagcaaatcattacaaacattctatgactattttctctctacgcttagtacttt 157  Q
    |||||||||||| |||||||||||| |||| |  ||||   ||||| || ||||||||||| | |||||  |||| || |||||  ||| || |||||||    
T  18553294 aacttaaagaaaagtaaattgcattgcattaatttaaaggatggttcagaaaatcattacatatattct--gactcttatctct--acg-ttggtacttt 18553388  T
Q  158 gagtgtttgaattctgtaaatgagatttgtgatccgcttttcctatgaaacactactatatata 221  Q
     ||||| |||||| |||||||||||| ||||| |   ||||| ||||||| |||||||||||||    
T  18553389 cagtgtatgaattatgtaaatgagatctgtgaacaatttttcatatgaaaaactactatatata 18553452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 12424724 - 12424785
Alignment:
Q  21 aaaatgcaagtaaaa-gacttaaaagtttaaacgcagtaacttaaagaaatgtaaattgcat 81  Q
    ||||||||||||||| | ||||||| || |||| ||  ||||||||||||||||||||||||    
T  12424724 aaaatgcaagtaaaatggcttaaaaattcaaacacataaacttaaagaaatgtaaattgcat 12424785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 24924834 - 24924882
Alignment:
Q  22 aaatgcaagtaaaagacttaaaagttt-aaacgcagtaacttaaagaaa 69  Q
    ||||||||||||||||||||||| ||| ||||| || ||||||||||||    
T  24924834 aaatgcaagtaaaagacttaaaattttaaaacgtagaaacttaaagaaa 24924882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 10235995 - 10236215
Alignment:
Q  1 ttcgacataaatcagtgaagaaaatgcaagtaaaagacttaaaagtttaaacgcagtaacttaaag-aaatgtaaattgcattacattgaaataaaatgt 99  Q
    ||||||||||| |||| ||| |||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||| |||| |||||||| ||    
T  10235995 ttcgacataaagcagtaaagcaaatgcaagtaaaagacttaaaagtttaaatgcagaaacttaaagaaaatgtaaattgcattgcattaaaataaaa-gt 10236093  T
Q  100 ggtttagcaaatc--attacaaacattctatgactattttctctctacgcttagtactttgagtgtttgaattctgtaaatgagatttgtgatccgcttt 197  Q
    |||| | ||||||  |||||| ||||| | ||||| ||||||||  |||| | |||||||||||| | ||||| | |||||  ||||||||| ||  |||    
T  10236094 ggttcaacaaatccgattacatacattatgtgactcttttctctaaacgc-tggtactttgagtgctagaattatataaat--gatttgtgacccatttt 10236190  T
Q  198 tcctatgaaacactactatatatat 222  Q
    || ||||||| ||||| || |||||    
T  10236191 tcttatgaaaaactacaatttatat 10236215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 20646425 - 20646614
Alignment:
Q  1 ttcgacataaatcagtgaagaaaatgcaagtaaaagacttaaaagtttaaacgcagtaacttaaagaaatgtaaattgcattacattgaaataaaatgtg 100  Q
    ||||||| | |||| ||||||||||| |||||||||||||||||||| ||| |||| |||||||||||||||||||| | || ||||||| ||||| |||    
T  20646425 ttcgacagagatcaatgaagaaaatgtaagtaaaagacttaaaagttaaaatgcagaaacttaaagaaatgtaaattactttgcattgaattaaaaggtg 20646524  T
Q  101 gtttagcaaatc--attacaaacattctatgactattttctctctacgcttagtactttgagtgtttgaattctgtaaatgagatttgtga 189  Q
    ||| |  ||| |  |||||| ||||| | |||||  |||||||  ||  || ||||||||| |||||||||| ||||||||||||||||||    
T  20646525 gttcaaaaaaccatattacatacattatgtgacttgtttctctagac-attggtactttgaatgtttgaattttgtaaatgagatttgtga 20646614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 30985700 - 30985608
Alignment:
Q  4 gacataaatcagtgaagaaaatgcaagtaaaagacttaaaagtttaaacgcagtaacttaaag-aaatgtaaattgcattacattgaaataaa 95  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| | || ||||||||| |||||||||||||||| |||| |||||||    
T  30985700 gacataaatcagtgaagaaaaggcaagtaaaagacttaaaagtttaaatgtagaaacttaaagaaaatgtaaattgcattgcattaaaataaa 30985608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 9423054 - 9423123
Alignment:
Q  1 ttcgacataaatcagtgaagaaaatgcaagta-aaagacttaaaagtttaaacgcagtaacttaaagaaa 69  Q
    ||||||| ||| |||| | ||||||||||||| |||||||||||||||||||||||  ||||||||||||    
T  9423054 ttcgacagaaagcagtaatgaaaatgcaagtataaagacttaaaagtttaaacgcatcaacttaaagaaa 9423123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 161
Target Start/End: Original strand, 16809593 - 16809695
Alignment:
Q  58 aacttaaagaaatgtaaattgcattacattgaaataaaatgtggtttagcaaatcattacaaacattctatgactattttctctctacgcttagtacttt 157  Q
    ||||||||||||  ||||||| ||| |||||||||  || |||||| | |||||| ||||  | ||||||||||| ||||||||||||| |  |||||||    
T  16809593 aacttaaagaaagataaattgtattgcattgaaatgtaa-gtggttcatcaaatctttacctaaattctatgactcttttctctctacgatgtgtacttt 16809691  T
Q  158 gagt 161  Q
    ||||    
T  16809692 gagt 16809695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 24309014 - 24309076
Alignment:
Q  22 aaatgcaagtaaaagacttaaaagttt-aaacgcagtaacttaaag-aaatgtaaattgcatt 82  Q
    ||||||||||||||||||||||||||| ||||| |  ||||||||| ||| ||||||||||||    
T  24309014 aaatgcaagtaaaagacttaaaagtttaaaacgtaaaaacttaaagaaaaggtaaattgcatt 24309076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 24364312 - 24364250
Alignment:
Q  22 aaatgcaagtaaaagacttaaaagttt-aaacgcagtaacttaaag-aaatgtaaattgcatt 82  Q
    ||||||||||||||||||||||||||| ||||| |  ||||||||| ||| ||||||||||||    
T  24364312 aaatgcaagtaaaagacttaaaagtttaaaacgtaaaaacttaaagaaaaggtaaattgcatt 24364250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 58 - 221
Target Start/End: Complemental strand, 22259344 - 22259180
Alignment:
Q  58 aacttaaagaaatgtaaattgcattacattgaaataaaatgtggtttagcaaatca--ttacaaacattctatgactattttctctctacgcttagtact 155  Q
    |||||||||||| || ||||||||| || |||| |||||  ||||| | |||||||  ||||| ||||||||| ||| ||||||||  |||||  |||||    
T  22259344 aacttaaagaaaagtgaattgcattgcaatgaagtaaaagatggttcaccaaatcaagttacatacattctattacttttttctctggacgctg-gtact 22259246  T
Q  156 ttgagtgtttgaattctgtaaatgagatttgtgatccgcttttcctatgaaacactactatatata 221  Q
    ||||||||||||||||||||| |||||||||||||||  ||||| ||||||| ||||| |||||||    
T  22259245 ttgagtgtttgaattctgtaactgagatttgtgatccatttttcatatgaaaaactacaatatata 22259180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 58 - 218
Target Start/End: Original strand, 6038949 - 6039106
Alignment:
Q  58 aacttaaagaaatgtaaattgcattacattgaaataaaatgtggtttagcaaatcattacaaacattctatgactattttctctctacgcttagtacttt 157  Q
    |||||||||||| ||||||| |||| |||| || | |||  ||||| | |||||| ||||| ||||| | ||||| |||||||||||||||  |||||||    
T  6038949 aacttaaagaaaagtaaatt-cattgcatt-aatttaaagatggttcaacaaatctttacatacattatgtgactcttttctctctacgctgggtacttt 6039046  T
Q  158 gagtgtttgaattctgtaaatgagatttgtgatccgcttttcctatgaaacactactatat 218  Q
    |||||||||||||||||||||||||||||||| |   |||| |||||||| ||||||||||    
T  6039047 gagtgtttgaattctgtaaatgagatttgtga-cttgtttttctatgaaaaactactatat 6039106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 34992304 - 34992373
Alignment:
Q  1 ttcgacataaatcagtgaagaaaatgcaagta-aaagacttaaaagtttaaacgcagtaacttaaagaaa 69  Q
    ||||||| ||| |||| | ||||||||||||| |||||||||||||||||||||| | ||||||||||||    
T  34992304 ttcgacagaaagcagtaatgaaaatgcaagtataaagacttaaaagtttaaacgcggaaacttaaagaaa 34992373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 10163398 - 10163326
Alignment:
Q  21 aaaatgcaagtaaaaga-cttaaaagtttaaacgcagtaacttaaagaaatgtaaattgcattacattgaaat 92  Q
    ||||||||||||||| | || ||||||| |||||||  ||||||||||||||||||||||||| |||| ||||    
T  10163398 aaaatgcaagtaaaaaagctcaaaagttcaaacgcaaaaacttaaagaaatgtaaattgcattgcatttaaat 10163326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 11744501 - 11744573
Alignment:
Q  21 aaaatgcaagtaaaa-gacttaaaagtttaaacgcagtaacttaaagaaatgtaaattgcattacattgaaat 92  Q
    ||||||||||||||| | |||||||||||||||| || ||||||||  ||||||||||||||| |||| ||||    
T  11744501 aaaatgcaagtaaaaaggcttaaaagtttaaacgtagaaacttaaaacaatgtaaattgcattgcatttaaat 11744573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 28712337 - 28712385
Alignment:
Q  22 aaatgcaagtaaaagacttaaaagttt-aaacgcagtaacttaaagaaa 69  Q
    |||||||||||||||||||||| |||| |||||||| ||||||||||||    
T  28712337 aaatgcaagtaaaagacttaaatgtttaaaacgcagaaacttaaagaaa 28712385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 17352660 - 17352731
Alignment:
Q  18 aagaaaatgcaagtaaaa-gacttaaaagtttaaacgcagtaacttaaag-aaatgtaaattgcattacatt 87  Q
    ||||||||| |||||||| |||||| |||||||||||||| || |||||| ||| |||||||||||| ||||    
T  17352660 aagaaaatgaaagtaaaaagacttagaagtttaaacgcagaaatttaaagaaaaggtaaattgcattgcatt 17352731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 17132646 - 17132865
Alignment:
Q  1 ttcgacataaatcagtgaagaaaatgcaagtaaaagacttaaaagtttaaacgcagtaacttaaagaaatgtaaattgcattacattgaaataaaatgtg 100  Q
    |||||||||||||| || ||||||||||||||||||||||||||||| ||| |||| |||||||||||| ||||||| |||| |||| |||  ||| |||    
T  17132646 ttcgacataaatcaatgtagaaaatgcaagtaaaagacttaaaagttaaaatgcag-aacttaaagaaaagtaaatttcattgcatt-aaagtaaaggtg 17132743  T
Q  101 gtttagcaaatca--ttacaaacattctatgactattttctctctacgcttagtactttgagtgtttgaattctgtaaatgagatttgtgatccgctttt 198  Q
    |||   |||||||  ||||| ||||| | ||||| |||| |||  |||| | ||||||| |||| | ||||||| |||    ||||||||| ||| ||||    
T  17132744 gttcgacaaatcaagttacatacattatgtgacttttttatctaaacgc-tggtactttcagtgctagaattctataataatgatttgtgaaccgttttt 17132842  T
Q  199 cctatgaaacactactatatata 221  Q
    ||||||||| |||||||||||||    
T  17132843 cctatgaaaaactactatatata 17132865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 45280070 - 45279987
Alignment:
Q  5 acataaatcagtgaagaaaatgcaagtaaaagacttaaaagtttaaacgc-agtaacttaaagaaatgtaaattgcattacatt 87  Q
    |||||||||| || | |||||||||||||||||||||||||||||||||| |  |||||||| ||| |||||||||||| ||||    
T  45280070 acataaatcaatgtaaaaaatgcaagtaaaagacttaaaagtttaaacgcaaaaaacttaaataaaagtaaattgcattgcatt 45279987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 1745030 - 1745117
Alignment:
Q  1 ttcgacataaatcagtgaagaaaatgcaagtaaaagacttaaaagtttaaacgcagtaactt-aaagaaatgtaaattgcattacatt 87  Q
    ||||||| | || ||| |||||||||||||||||| |||||||||||||||||||| ||||| ||  ||| |||||||||||| ||||    
T  1745030 ttcgacagagataagtaaagaaaatgcaagtaaaatacttaaaagtttaaacgcagaaacttgaacaaaaggtaaattgcattgcatt 1745117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 4022872 - 4022834
Alignment:
Q  18 aagaaaatgcaagtaaaagacttaaaagtttaaacgcag 56  Q
    |||||||||||||||||||||||||||||||||||||||    
T  4022872 aagaaaatgcaagtaaaagacttaaaagtttaaacgcag 4022834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 44451016 - 44450966
Alignment:
Q  20 gaaaatgcaagta-aaagacttaaaagtttaaacgcagtaacttaaagaaa 69  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  44451016 gaaaatgcaagtataaagacttaaaagtttaaacgcagaaacttaaagaaa 44450966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 4026541 - 4026453
Alignment:
Q  1 ttcgacataaatcagtgaagaaaatgcaagtaaaagacttaaaagtttaaacgcagtaac-ttaaag-aaatgtaaattgcattacatt 87  Q
    ||||||| | || ||| ||||||||||||||||||||| | ||||||||||||||  ||| |||||| |||||||||||||||| ||||    
T  4026541 ttcgacagagataagtaaagaaaatgcaagtaaaagacatcaaagtttaaacgcataaactttaaagaaaatgtaaattgcattgcatt 4026453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 25321132 - 25321186
Alignment:
Q  34 aagacttaaaagtttaaacgcagtaacttaaag-aaatgtaaattgcattacatt 87  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||| |||| ||||    
T  25321132 aagacttaaaagtttaaacgcagaaacttaaagaaaatgtaaattacattgcatt 25321186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 198
Target Start/End: Original strand, 52496701 - 52496747
Alignment:
Q  152 tactttgagtgtttgaattctgtaaatgagatttgtgatccgctttt 198  Q
    |||||||||||| |||||| |||||||||||||||||| || |||||    
T  52496701 tactttgagtgtatgaattatgtaaatgagatttgtgacccactttt 52496747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 9101803 - 9101735
Alignment:
Q  21 aaaatgcaagtaaaagacttaaaagttt-aaacgcagtaacttaaagaaatg-taaattgcattacatt 87  Q
    |||||| ||||||| ||||||||||||| ||| |||| |||||||||||| | ||||||||||| ||||    
T  9101803 aaaatgtaagtaaatgacttaaaagtttaaaaagcagcaacttaaagaaaagttaaattgcattgcatt 9101735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 48896001 - 48896073
Alignment:
Q  21 aaaatgcaagtaaaaga-cttaaaagtttaaacgcagtaacttaaagaaatgtaaattgcattacattgaaat 92  Q
    ||||||||||||||| | |||||||||| |||  ||  |||||||||||||||||||| |||| |||| ||||    
T  48896001 aaaatgcaagtaaaaaagcttaaaagttcaaaaacataaacttaaagaaatgtaaatttcattgcatttaaat 48896073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 53589272 - 53589204
Alignment:
Q  1 ttcgacataaatcagtgaagaaaatgcaagtaaaagacttaaaagtttaaacgcagtaacttaaagaaa 69  Q
    ||||||| | |||| | ||||| || |||||||| ||||| |||||||||||| || ||||||||||||    
T  53589272 ttcgacagagatcaataaagaatattcaagtaaatgactttaaagtttaaacgtagaaacttaaagaaa 53589204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 31000058 - 30999976
Alignment:
Q  1 ttcgacataaatcagtgaagaaaatgcaagtaaaagacttaaaagtttaaacgcagtaacttaaag-aaatgtaaattgcatt 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||| ||||| |||| |||||||||||    
T  31000058 ttcgacataaatcagtgaagaaaatgcaagtaaaagacttaaaagtttaaatgcataaacataaagaaaatttaaattgcatt 30999976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 185
Target Start/End: Original strand, 21625353 - 21625504
Alignment:
Q  27 caagtaaaagacttaaaagtttaaacgcagtaacttaaagaaatgtaaattgcattacattgaaataaaatgtggtttagcaaatca--ttacaaacatt 124  Q
    ||||||||||||||||||||||||| |||  |||| |||||||||||||||| |||       ||| ||| || ||| | |||||||  ||||| |||||    
T  21625353 caagtaaaagacttaaaagtttaaatgcaaaaactgaaagaaatgtaaattgtatt------gaattaaaggtagttcaacaaatcaagttacatacatt 21625446  T
Q  125 ctatgactattttctctctacgcttagtactttgagtgtttgaattctgtaaatgagattt 185  Q
    |   |||| ||||||||||| |||| ||||||||||| |||||||| ||||||||||||||    
T  21625447 c--cgactcttttctctctatgctt-gtactttgagtatttgaattttgtaaatgagattt 21625504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 17162138 - 17162070
Alignment:
Q  21 aaaatgcaagtaaaagac-ttaaaagtttaaacgcagtaacttaaa-gaaatgtaaattgcattacatt 87  Q
    |||||||||||||||||| |||||||||||||| ||  |||||||| |||| |||||||||||| ||||    
T  17162138 aaaatgcaagtaaaagactttaaaagtttaaacacaaaaacttaaaggaaaggtaaattgcattgcatt 17162070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 17636666 - 17636717
Alignment:
Q  20 gaaaatgcaagtaaaagac-ttaaaagttt-aaacgcagtaacttaaagaaa 69  Q
    ||||||||||||||||||| |||||||||| |||||||| ||||||||||||    
T  17636666 gaaaatgcaagtaaaagactttaaaagtttaaaacgcagaaacttaaagaaa 17636717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 7948158 - 7948089
Alignment:
Q  19 agaaaatgcaagtaaaagacttaaaagtttaaacgcagtaacttaaag-aaatgtaaattgcattacatt 87  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||| ||||    
T  7948158 agaaaatgcaagtaaaagacttaaaagtttaaacgcagaaacttaaagaaaaggtaaattgcattgcatt 7948089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 12468879 - 12468955
Alignment:
Q  11 atcagtgaagaaaatgcaagtaaaagacttaaaagtttaaacgcagtaacttaaagaaatgtaaattgcattacatt 87  Q
    |||||| |||||||||||| |||||||||||||| ||||||||||  |||||||||||| |||||||||||| ||||    
T  12468879 atcagtaaagaaaatgcaaataaaagacttaaaaatttaaacgcataaacttaaagaaaagtaaattgcattgcatt 12468955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 1545765 - 1545699
Alignment:
Q  22 aaatgcaagtaaaagacttaaaagtttaaacgcagtaacttaaag-aaatgtaaattgcattacatt 87  Q
    ||||||||||||||||||||||||||||||||||| || |||||| ||| |||||||||||| ||||    
T  1545765 aaatgcaagtaaaagacttaaaagtttaaacgcagaaaattaaagaaaaggtaaattgcattgcatt 1545699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 11994067 - 11994017
Alignment:
Q  20 gaaaatgcaagta-aaagacttaaaagtttaaacgcagtaacttaaagaaa 69  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  11994067 gaaaatgcaagtataaagacttaaaagtttaaacgcagaaacttaaagaaa 11994017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 15682786 - 15682874
Alignment:
Q  1 ttcgacataaatcagtgaagaaaatgcaagtaaaagacttaaaagtttaaacgcagtaacttaaagaaa--tgtaaattgcattacatt 87  Q
    |||||||||||| ||||||| |||||||| ||||| ||||||||||||||| |||  ||||| || |||  ||||||||||||| ||||    
T  15682786 ttcgacataaattagtgaagtaaatgcaactaaaacacttaaaagtttaaatgcatcaactttaataaaagtgtaaattgcattgcatt 15682874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 18084281 - 18084338
Alignment:
Q  40 taaaagtttaaa-cgcagtaacttaaagaaatg-taaattgcattacattgaaataaa 95  Q
    |||||||||||| ||||| |||||||||||| | |||||||||||||||| |||||||    
T  18084281 taaaagtttaaaacgcagaaacttaaagaaaagataaattgcattacattaaaataaa 18084338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 25621245 - 25621196
Alignment:
Q  22 aaatgcaagtaaaa-gacttaaaagttt-aaacgcagtaacttaaagaaa 69  Q
    |||||||||||||| ||||||||||||| |||||||| ||||||||||||    
T  25621245 aaatgcaagtaaaaagacttaaaagtttaaaacgcagaaacttaaagaaa 25621196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 25018609 - 25018682
Alignment:
Q  21 aaaatgcaagtaaaa-gacttaaaagtttaaacgcagtaacttaaagaaatgtaaattgcattacattgaaata 93  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||| |||| |||||    
T  25018609 aaaatgcaagtaaaaagacttaaaagtttaaacgcagaaacttaaagaaaggtaaattgcattgcatttaaata 25018682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 24633445 - 24633379
Alignment:
Q  22 aaatgcaagtaaaagacttaaaagtttaaacgcagtaacttaaag-aaatgtaaattgcattacatt 87  Q
    ||||||||||||||||||| ||||||| ||||||| ||||||||| |||||||||||||||||||||    
T  24633445 aaatgcaagtaaaagactttaaagttttaacgcagaaacttaaagaaaatgtaaattgcattacatt 24633379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 107 - 212
Target Start/End: Original strand, 11110704 - 11110809
Alignment:
Q  107 caaatcattacaaacattctatgactattttctctctacgcttagtactttgagtgtttgaattctgtaaatgagatttgtgatccgcttttcctatgaa 206  Q
    |||||| ||||| ||||| |||||||||||||||||||| |   ||||||||||| || |||||||||||  | ||||||||| ||| ||||||||||||    
T  11110704 caaatctttacatacattttatgactattttctctctacaccgggtactttgagttttagaattctgtaatagtgatttgtgacccgtttttcctatgaa 11110803  T
Q  207 acacta 212  Q
    | ||||    
T  11110804 aaacta 11110809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 11821789 - 11821858
Alignment:
Q  18 aagaaaatgcaagtaaaag-acttaaaagtttaaacgcagtaacttaaagaaatgtaaattgcattacatt 87  Q
    ||||||||||||||||||  |||||||||||||| ||||  ||||||||||||||||||||||||| ||||    
T  11821789 aagaaaatgcaagtaaaaatacttaaaagtttaa-cgcaaaaacttaaagaaatgtaaattgcattgcatt 11821858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 13962814 - 13962902
Alignment:
Q  1 ttcgacataaatcagtgaagaaaatgcaagtaaaagacttaaaagtttaaacgcagtaac-ttaaag-aaatgtaaattgcattacatt 87  Q
    ||||||| | || ||| ||||||||||||||||||||| | ||||||||||||||  ||| |||||| |||||||||||||||| ||||    
T  13962814 ttcgacagagataagtaaagaaaatgcaagtaaaagacatcaaagtttaaacgcataaactttaaagaaaatgtaaattgcattgcatt 13962902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 13966367 - 13966405
Alignment:
Q  18 aagaaaatgcaagtaaaagacttaaaagtttaaacgcag 56  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  13966367 aagaaaatgcaagtaaaagatttaaaagtttaaacgcag 13966405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 141
Target Start/End: Complemental strand, 22785211 - 22785111
Alignment:
Q  42 aaagtttaaacgcagtaacttaaagaaatgtaaattgcattacattgaaataaaatgtggtttagcaaatca--ttacaaacattctatgactattttct 139  Q
    |||||||||| |||| |||||||| |||||||||||||| | ||||||| | ||| |||||| | |||||||  ||||| ||||| | ||||| ||||||    
T  22785211 aaagtttaaatgcagaaacttaaacaaatgtaaattgca-tgcattgaatttaaaggtggttcaccaaatcaagttacatacattttgtgactcttttct 22785113  T
Q  140 ct 141  Q
    ||    
T  22785112 ct 22785111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 33379492 - 33379460
Alignment:
Q  19 agaaaatgcaagtaaaagacttaaaagtttaaa 51  Q
    |||||||||| ||||||||||||||||||||||    
T  33379492 agaaaatgcatgtaaaagacttaaaagtttaaa 33379460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0608 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 107 - 212
Target Start/End: Original strand, 6141 - 6246
Alignment:
Q  107 caaatcattacaaacattctatgactattttctctctacgcttagtactttgagtgtttgaattctgtaaatgagatttgtgatccgcttttcctatgaa 206  Q
    |||||| ||||| ||||| |||||||||||||||||||| |   ||||||||||| || |||||||||||  | ||||||||| ||| ||||||||||||    
T  6141 caaatctttacatacattttatgactattttctctctacaccgggtactttgagttttagaattctgtaatagtgatttgtgacccgtttttcctatgaa 6240  T
Q  207 acacta 212  Q
    | ||||    
T  6241 aaacta 6246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 22450165 - 22450098
Alignment:
Q  21 aaaatgcaagtaaaagacttaaaagtttaaacgcagtaacttaaagaaat-gtaaattgcattacatt 87  Q
    ||||||||||||||||| || ||||||||||||||  ||||||||||||| |||||||||||| ||||    
T  22450165 aaaatgcaagtaaaagattttaaagtttaaacgcataaacttaaagaaatggtaaattgcattgcatt 22450098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 151 - 221
Target Start/End: Complemental strand, 27814929 - 27814859
Alignment:
Q  151 gtactttgagtgtttgaattctgtaaatgagatttgtgatccgcttttcctatgaaacactactatatata 221  Q
    |||||||||||||||| | |||||||||||||||| ||| ||  |||||||||| || |||||||||||||    
T  27814929 gtactttgagtgtttggaatctgtaaatgagatttatgacccctttttcctatggaaaactactatatata 27814859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 28291703 - 28291637
Alignment:
Q  22 aaatgcaagtaaaagacttaaaagtttaaacgcagtaacttaaagaaatg-taaattgcattacatt 87  Q
    ||||||||||||||||||||||||||||||||||  || ||||||||| | ||||||||||| ||||    
T  28291703 aaatgcaagtaaaagacttaaaagtttaaacgcaaaaatttaaagaaaagctaaattgcattgcatt 28291637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 15341057 - 15340893
Alignment:
Q  21 aaaatgcaagtaa-aagacttaaaagtttaaacgcagtaacttaaagaaatgtaaattgcattaca-ttgaaataaaatgtggtttagcaaatca--tta 116  Q
    ||||||||||||| || ||||||||||| |||  ||| |||||| |||||||||||||||||| || || ||   ||| |||||||  |||||||  |||    
T  15341057 aaaatgcaagtaagaaaacttaaaagttcaaaaacagaaacttatagaaatgtaaattgcattgcatttcaacgtaaaggtggtttgacaaatcagttta 15340958  T
Q  117 caaacattc--tatgactattttctctctacgcttagtactttgagtgtttgaattctgtaaatga 180  Q
    || ||||||  ||||||| ||||||||  |||| |||||||||||||| | ||||||| |||||||    
T  15340957 catacattctgtatgactcttttctctagacgc-tagtactttgagtgctagaattctataaatga 15340893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 15430122 - 15429958
Alignment:
Q  21 aaaatgcaagtaa-aagacttaaaagtttaaacgcagtaacttaaagaaatgtaaattgcattaca-ttgaaataaaatgtggtttagcaaatca--tta 116  Q
    ||||||||||||| || ||||||||||| |||  ||| |||||| |||||||||||||||||| || || ||   ||| |||||||  |||||||  |||    
T  15430122 aaaatgcaagtaagaaaacttaaaagttcaaaaacagaaacttatagaaatgtaaattgcattgcatttcaacgtaaaggtggtttgacaaatcagttta 15430023  T
Q  117 caaacattc--tatgactattttctctctacgcttagtactttgagtgtttgaattctgtaaatga 180  Q
    || ||||||  ||||||| ||||||||  |||| |||||||||||||| | ||||||| |||||||    
T  15430022 catacattctgtatgactcttttctctagacgc-tagtactttgagtgctagaattctataaatga 15429958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 15521426 - 15521262
Alignment:
Q  21 aaaatgcaagtaa-aagacttaaaagtttaaacgcagtaacttaaagaaatgtaaattgcattaca-ttgaaataaaatgtggtttagcaaatca--tta 116  Q
    ||||||||||||| || ||||||||||| |||  ||| |||||| |||||||||||||||||| || || ||   ||| |||||||  |||||||  |||    
T  15521426 aaaatgcaagtaagaaaacttaaaagttcaaaaacagaaacttatagaaatgtaaattgcattgcatttcaacgtaaaggtggtttgacaaatcagttta 15521327  T
Q  117 caaacattc--tatgactattttctctctacgcttagtactttgagtgtttgaattctgtaaatga 180  Q
    || ||||||  ||||||| ||||||||  |||| |||||||||||||| | ||||||| |||||||    
T  15521326 catacattctgtatgactcttttctctagacgc-tagtactttgagtgctagaattctataaatga 15521262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 28862626 - 28862523
Alignment:
Q  1 ttcgacataaatcagtgaagaaaatgcaagtaaaagacttaaaagtttaaacgcagtaacttaaagaaatgtaaattgcattacattgaaataaaatgtg 100  Q
    |||||||  ||||| |||||| |||  ||||||||  ||||||| |||| |  ||| ||||||||||||||||||||||||| ||||||| | ||| |||    
T  28862626 ttcgacaagaatcaatgaagacaatataagtaaaacgcttaaaactttatattcagaaacttaaagaaatgtaaattgcattgcattgaattcaaaggtg 28862527  T
Q  101 gttt 104  Q
    ||||    
T  28862526 gttt 28862523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 32352142 - 32352193
Alignment:
Q  18 aagaaaatgcaagtaaaagacttaaaagtttaaacgcagtaacttaaagaaa 69  Q
    ||||||||||||||||||| ||||||||||||||||||  ||||| ||||||    
T  32352142 aagaaaatgcaagtaaaaggcttaaaagtttaaacgcaaaaacttgaagaaa 32352193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 32368803 - 32368854
Alignment:
Q  18 aagaaaatgcaagtaaaagacttaaaagtttaaacgcagtaacttaaagaaa 69  Q
    ||||||||||||||||||| ||||||||||||||||||  ||||| ||||||    
T  32368803 aagaaaatgcaagtaaaaggcttaaaagtttaaacgcaaaaacttgaagaaa 32368854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 5892553 - 5892759
Alignment:
Q  18 aagaaaatgcaagtaaaa--gactt-aaaagtttaaacgcagtaacttaaag-aaatgtaaattgcattacattgaaataaaatgtggtttagcaaatc- 112  Q
    ||||||||||||||||||  ||||| |||| ||||||||||  ||||||||| |||||||||||||||| |||| ||   |||||||||  | ||||||     
T  5892553 aagaaaatgcaagtaaaaaagactttaaaattttaaacgcataaacttaaagaaaatgtaaattgcattgcatt-aatgtaaatgtggtacaacaaatca 5892651  T
Q  113 -attacaaacattct-atgactattttctctctacgcttagtactttgagtgtttgaattctgtaaatgagatttgtgatccgcttttcctatgaaacac 210  Q
     |||||| ||||| |  ||||| |||||| |  ||| || |||||| ||||| | ||||||| |||||  ||||||||| ||| ||||| ||||||| ||    
T  5892652 aattacatacattttggtgactcttttctttagacg-ttggtacttcgagtgctagaattctataaat--gatttgtgacccgtttttcatatgaaaaac 5892748  T
Q  211 tactatatata 221  Q
    |||||||||||    
T  5892749 tactatatata 5892759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 207
Target Start/End: Complemental strand, 27816874 - 27816769
Alignment:
Q  99 tggtttagcaaatcattacaaacattctatgactattttctctctacgcttagtactttgagtgtttgaattctgtaaatgagatttgtgatccgctttt 198  Q
    |||||||||||||| ||||  | |||||  ||||||| | ||| ||||||  ||||||||| ||||||| |||| ||||| |||||||||| ||  ||||    
T  27816874 tggtttagcaaatctttacgtatattct--gactattgtttctgtacgctg-gtactttgaatgtttgagttctataaataagatttgtgaccccttttt 27816778  T
Q  199 cctatgaaa 207  Q
    |||||||||    
T  27816777 cctatgaaa 27816769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 51
Target Start/End: Complemental strand, 41652145 - 41652116
Alignment:
Q  22 aaatgcaagtaaaagacttaaaagtttaaa 51  Q
    ||||||||||||||||||||||||||||||    
T  41652145 aaatgcaagtaaaagacttaaaagtttaaa 41652116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 6017504 - 6017576
Alignment:
Q  21 aaaatgcaagtaaaaga-cttaaaagtttaaacgcagtaacttaaagaaatgtaaattgcattacattgaaat 92  Q
    |||||||||||||||   ||||||| || |||||||  || |||||||||||||||||||||| |||| ||||    
T  6017504 aaaatgcaagtaaaaatgcttaaaatttcaaacgcaaaaatttaaagaaatgtaaattgcattgcatttaaat 6017576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 22950 - 23169
Alignment:
Q  1 ttcgacataaatcagtgaagaaaatgcaagtaaaa--gacttaaaagtttaaacgcagtaacttaaag-aaatgtaaattgcattacattgaaataaaat 97  Q
    ||||||| |||| ||| ||||| ||||||||||||  ||||||||||||||||| ||  ||||||||| ||| ||||||||||||  ||| || | ||||    
T  22950 ttcgacagaaataagtaaagaacatgcaagtaaaaaagacttaaaagtttaaacaca--aacttaaagaaaacgtaaattgcattgaatt-aatttaaat 23046  T
Q  98 gtggtttagcaaatc--attacaaacattctatgactattttctctctacgcttagtactttgagtgtttgaattctgtaaatgagatttgtgatccgct 195  Q
    |||||  | ||||||  |||| | ||||| | ||||| ||||||||  |||| | ||||||||||||   ||||||| |||||  |||||||||   | |    
T  23047 gtggtacaacaaatcagattatatacattttgtgactcttttctctaaacgc-tggtactttgagtgcgagaattctataaat--gatttgtgacttgtt 23143  T
Q  196 tttcctatgaaacactactatatata 221  Q
    |||| ||||||| |||||||||||||    
T  23144 tttcatatgaaaaactactatatata 23169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0431 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 5251 - 5190
Alignment:
Q  21 aaaatgcaagtaaaa-gacttaaaagtttaaacgcagtaacttaaagaaatgtaaattgcat 81  Q
    ||||||||||||||| | ||||||| || |||| ||  ||||||||||||||||||||||||    
T  5251 aaaatgcaagtaaaatggcttaaaaattcaaacacataaacttaaagaaatgtaaattgcat 5190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University