View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1605_low_38 (Length: 237)

Name: NF1605_low_38
Description: NF1605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1605_low_38
NF1605_low_38
[»] chr7 (2 HSPs)
chr7 (1-220)||(33744094-33744313)
chr7 (65-100)||(496907-496942)
[»] scaffold0009 (1 HSPs)
scaffold0009 (61-129)||(53640-53708)
[»] chr5 (1 HSPs)
chr5 (61-116)||(3955906-3955961)
[»] chr6 (1 HSPs)
chr6 (61-115)||(23958756-23958810)
[»] chr2 (3 HSPs)
chr2 (71-129)||(3872371-3872429)
chr2 (80-122)||(43777359-43777401)
chr2 (64-100)||(13277901-13277937)
[»] chr4 (1 HSPs)
chr4 (105-154)||(13276026-13276075)
[»] chr3 (1 HSPs)
chr3 (64-113)||(51940355-51940404)
[»] chr1 (1 HSPs)
chr1 (61-129)||(42561017-42561084)


Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 33744313 - 33744094
Alignment:
Q  1 tatgtcgaaatatttgtgacgtttaaacttatatctttttcaataaaaatcaacaatagggaaaaatttatttaaagatataattgcaataatgaaaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  33744313 tatgtcgaaatatttgtgacgtttaaacttatatctttttcaataaaaatcaacaataggaaaaaatttatttaaagatataattgcaataatgaaaaat 33744214  T
Q  101 ctaacacaaaatctctcattccctttataaattattgttttagataatattgttataatgaggtgattcatattttaatcgtatttaactatttttaaaa 200  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  33744213 ctaacataaaatctctcattccctttataaattattgttttagataatattgttataatgaggtgattcatattttaatggtatttaactattttgaaaa 33744114  T
Q  201 ttaataatgtaagttctctc 220  Q
    |||||||| |||||||||||    
T  33744113 ttaataatttaagttctctc 33744094  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 100
Target Start/End: Complemental strand, 496942 - 496907
Alignment:
Q  65 aatttatttaaagatataattgcaataatgaaaaat 100  Q
    |||||||||||||||||||||| |||||||||||||    
T  496942 aatttatttaaagatataattgaaataatgaaaaat 496907  T

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Target: scaffold0009 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 53708 - 53640
Alignment:
Q  61 gaaaaatttatttaaagatataattgcaataatgaaaaatctaacacaaaatctctcattccctttata 129  Q
    ||||||||| |||||||||||||||| ||||||||||||   ||||||| ||| | |||||| ||||||    
T  53708 gaaaaatttgtttaaagatataattgaaataatgaaaaagtcaacacaatatcccccattccatttata 53640  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 3955906 - 3955961
Alignment:
Q  61 gaaaaatttatttaaagatataattgcaataatgaaaaatctaacacaaaatctct 116  Q
    ||||||||| ||||||| || ||||| |||||||||||||| ||| ||||||||||    
T  3955906 gaaaaatttgtttaaaggtacaattggaataatgaaaaatccaacccaaaatctct 3955961  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 115
Target Start/End: Complemental strand, 23958810 - 23958756
Alignment:
Q  61 gaaaaatttatttaaagatataattgcaataatgaaaaatctaacacaaaatctc 115  Q
    ||||||||| ||||||| | |||||| |||||||||||||| ||| |||||||||    
T  23958810 gaaaaatttgtttaaaggtgtaattgaaataatgaaaaatccaactcaaaatctc 23958756  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 129
Target Start/End: Original strand, 3872371 - 3872429
Alignment:
Q  71 tttaaagatataattgcaataatgaaaaatctaacacaaaatctctcattccctttata 129  Q
    ||||| |||||||||| |||||| ||||| | ||| |||||||||| ||||||||||||    
T  3872371 tttaaggatataattgaaataataaaaaagccaacccaaaatctcttattccctttata 3872429  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 43777359 - 43777401
Alignment:
Q  80 ataattgcaataatgaaaaatctaacacaaaatctctcattcc 122  Q
    ||||||| |||||||||||||||| | ||||||||||||||||    
T  43777359 ataattgaaataatgaaaaatctagcccaaaatctctcattcc 43777401  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 13277937 - 13277901
Alignment:
Q  64 aaatttatttaaagatataattgcaataatgaaaaat 100  Q
    |||||||||||| |||||||||| |||||||||||||    
T  13277937 aaatttatttaaggatataattgaaataatgaaaaat 13277901  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 154
Target Start/End: Original strand, 13276026 - 13276075
Alignment:
Q  105 cacaaaatctctcattccctttataaattattgttttagataatattgtt 154  Q
    |||||||||| |||| ||| ||||| ||||||||| ||||||||||||||    
T  13276026 cacaaaatctatcatcccccttatatattattgttatagataatattgtt 13276075  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 113
Target Start/End: Complemental strand, 51940404 - 51940355
Alignment:
Q  64 aaatttatttaaagatataattgcaataatgaaaaatctaacacaaaatc 113  Q
    |||||||||||| | |||||||| |||||||||||||| ||| |||||||    
T  51940404 aaatttatttaagggtataattggaataatgaaaaatccaacccaaaatc 51940355  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 129
Target Start/End: Original strand, 42561017 - 42561084
Alignment:
Q  61 gaaaaatttatttaaagatataattgcaataatgaaaaatctaacacaaaatctctcattccctttata 129  Q
    ||||||||| ||||| | |||||||| |||||||||||||| ||  ||||||||| |||| ||||||||    
T  42561017 gaaaaatttgtttaagggtataattggaataatgaaaaatccaatccaaaatctc-catttcctttata 42561084  T

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