View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1605_low_4 (Length: 477)
Name: NF1605_low_4
Description: NF1605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1605_low_4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Complemental strand, 5834358 - 5833882
Alignment:
| Q |
1 |
atgttttgttatttacagcaattattctttaattgccgaaacaactaaaaacttaattaactttggcctgtcccttgcctaaaccaaatgggctacgata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5834358 |
atgttttgttatttacagcaattattctttaattgccgaaacaactaaaaacttaattaactttggcctgtcccttgcctaaaccaaatgggctacgata |
5834259 |
T |
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| Q |
101 |
attctttaagccggcacacatcactttcaaaagggtaccaaaccctgcaacgaaatggccgtgacgacttagcctaagacaattttatgctgacatggca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5834258 |
attctttaagccggcacacatcactttcaaaagggtaccaaaccctgcaacgaaatggccgtgacgaattagcctaagacaattttatgctgacatggca |
5834159 |
T |
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| Q |
201 |
acacatgtggaccctacttgtcggccacaatccattcatctctacgtgtttttggtcccacatgtctccctttgatgttcacaataacaattgcttttaa |
300 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5834158 |
acacatgtggaccctacttgtcggccacaatcccttcatctctacgtgtttttggtcccacatgtctccctttgatgttcacaataacaattgcttttaa |
5834059 |
T |
|
| Q |
301 |
ttttttgtctccttaattcaccattaactccttcaacgtccttccaaaagtactatttggtccggcttgtccacgtggttacccattattactcgactgt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5834058 |
ttttttgtctccttaattcaccattaactccttcaacgtccttccaaaagtactatttggtccggcttgtccacgtggttacccattattactcgagtgt |
5833959 |
T |
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| Q |
401 |
gatgacgtggctataaatactccttcacctttcatgcattcttcttcattctcatttctcatatctctcatatttcc |
477 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5833958 |
gatgacgtggctataaatactccttcacccttcatgcattcttcttcattctcatttctcatatctctcatatttcc |
5833882 |
T |
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