View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1605_low_40 (Length: 235)

Name: NF1605_low_40
Description: NF1605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1605_low_40
NF1605_low_40
[»] chr4 (8 HSPs)
chr4 (73-224)||(32428132-32428283)
chr4 (40-74)||(55927134-55927168)
chr4 (40-72)||(16004216-16004248)
chr4 (40-74)||(24772821-24772855)
chr4 (40-74)||(25476771-25476805)
chr4 (137-178)||(18932396-18932437)
chr4 (40-69)||(34616491-34616520)
chr4 (40-69)||(56364158-56364187)
[»] chr3 (7 HSPs)
chr3 (73-192)||(43072604-43072724)
chr3 (40-73)||(41111960-41111993)
chr3 (40-72)||(20162584-20162616)
chr3 (40-74)||(31997953-31997987)
chr3 (40-69)||(23592387-23592416)
chr3 (40-69)||(49131004-49131033)
chr3 (40-72)||(19418049-19418081)
[»] chr7 (8 HSPs)
chr7 (105-178)||(8381407-8381484)
chr7 (118-178)||(3961515-3961579)
chr7 (40-69)||(7701464-7701493)
chr7 (43-72)||(44894363-44894392)
chr7 (40-69)||(46022376-46022405)
chr7 (40-72)||(5378777-5378809)
chr7 (40-72)||(10591302-10591334)
chr7 (40-72)||(32171024-32171056)
[»] chr8 (2 HSPs)
chr8 (40-74)||(41344556-41344590)
chr8 (40-73)||(1370183-1370216)
[»] chr6 (3 HSPs)
chr6 (40-74)||(34021059-34021093)
chr6 (40-74)||(16336957-16336991)
chr6 (40-74)||(30906550-30906584)
[»] chr5 (5 HSPs)
chr5 (40-74)||(20719902-20719936)
chr5 (40-73)||(40566104-40566137)
chr5 (40-69)||(17625916-17625945)
chr5 (40-84)||(11767867-11767911)
chr5 (40-72)||(24431507-24431539)
[»] chr1 (7 HSPs)
chr1 (40-73)||(46948129-46948162)
chr1 (40-72)||(7645443-7645475)
chr1 (40-72)||(40610379-40610411)
chr1 (40-74)||(28716293-28716327)
chr1 (40-74)||(43755573-43755607)
chr1 (40-69)||(24981678-24981707)
chr1 (40-69)||(46907126-46907155)
[»] chr2 (7 HSPs)
chr2 (40-72)||(14714136-14714168)
chr2 (40-74)||(22390302-22390336)
chr2 (40-74)||(44189975-44190009)
chr2 (40-73)||(2013173-2013206)
chr2 (40-73)||(15141600-15141633)
chr2 (40-69)||(25270691-25270720)
chr2 (40-72)||(23344878-23344910)


Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 73 - 224
Target Start/End: Complemental strand, 32428283 - 32428132
Alignment:
Q  73 ttgcatgaatactttaccatatgtatataactacgcctcaggctgtttagcaattttttgacacaagataaactattgttttctgacacaagtaaaataa 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32428283 ttgcatgaatactttaccatatgtatataactacgcctcaggctgtttagcaattttttgacacaagataaactattgttttctgacacaagtaaaataa 32428184  T
Q  173 tatatataaactaaattattattattttacacaatgaattgcattgactttg 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32428183 tatatataaactaaattattattattttacacaatgaattgcattgactttg 32428132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 55927134 - 55927168
Alignment:
Q  40 ttgtctcaaatggatgttcaaatatcactactctt 74  Q
    |||||||||||||||||||||||||||||||||||    
T  55927134 ttgtctcaaatggatgttcaaatatcactactctt 55927168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 16004248 - 16004216
Alignment:
Q  40 ttgtctcaaatggatgttcaaatatcactactc 72  Q
    |||||||||||||||||||||||||||||||||    
T  16004248 ttgtctcaaatggatgttcaaatatcactactc 16004216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 24772821 - 24772855
Alignment:
Q  40 ttgtctcaaatggatgttcaaatatcactactctt 74  Q
    |||||||||||||||||||||||||||| ||||||    
T  24772821 ttgtctcaaatggatgttcaaatatcaccactctt 24772855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 25476771 - 25476805
Alignment:
Q  40 ttgtctcaaatggatgttcaaatatcactactctt 74  Q
    ||||||||||||||||||||||||||| |||||||    
T  25476771 ttgtctcaaatggatgttcaaatatcattactctt 25476805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 178
Target Start/End: Original strand, 18932396 - 18932437
Alignment:
Q  137 aagataaactattgttttctgacacaagtaaaataatatata 178  Q
    |||||||| |||||||||||  ||||||||||||||||||||    
T  18932396 aagataaaatattgttttctaccacaagtaaaataatatata 18932437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 69
Target Start/End: Original strand, 34616491 - 34616520
Alignment:
Q  40 ttgtctcaaatggatgttcaaatatcacta 69  Q
    ||||||||||||||||||||||||||||||    
T  34616491 ttgtctcaaatggatgttcaaatatcacta 34616520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 69
Target Start/End: Complemental strand, 56364187 - 56364158
Alignment:
Q  40 ttgtctcaaatggatgttcaaatatcacta 69  Q
    ||||||||||||||||||||||||||||||    
T  56364187 ttgtctcaaatggatgttcaaatatcacta 56364158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 73 - 192
Target Start/End: Complemental strand, 43072724 - 43072604
Alignment:
Q  73 ttgcatgaatactttaccatatgtatata--act-acgcctcaggctgtttagcaattttttgacacaagataaactattgttttctgacacaagtaaaa 169  Q
    ||||| ||||| | |||||||||||||||  ||| |||||||| | |||||||||||||||||||  |||||||| ||||||||||||||||||||||||    
T  43072724 ttgcaagaataatgtaccatatgtatatataactcacgcctcatgttgtttagcaattttttgacggaagataaaatattgttttctgacacaagtaaaa 43072625  T
Q  170 taatatatataaactaaattatt 192  Q
    |||  |||| |||||||||||||    
T  43072624 taa--tatacaaactaaattatt 43072604  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 73
Target Start/End: Complemental strand, 41111993 - 41111960
Alignment:
Q  40 ttgtctcaaatggatgttcaaatatcactactct 73  Q
    ||||||||||||||||||||||||||||||||||    
T  41111993 ttgtctcaaatggatgttcaaatatcactactct 41111960  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 20162616 - 20162584
Alignment:
Q  40 ttgtctcaaatggatgttcaaatatcactactc 72  Q
    |||||||||||||||||||||||||||||||||    
T  20162616 ttgtctcaaatggatgttcaaatatcactactc 20162584  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 31997953 - 31997987
Alignment:
Q  40 ttgtctcaaatggatgttcaaatatcactactctt 74  Q
    ||||||||||||| |||||||||||||||||||||    
T  31997953 ttgtctcaaatggttgttcaaatatcactactctt 31997987  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 69
Target Start/End: Original strand, 23592387 - 23592416
Alignment:
Q  40 ttgtctcaaatggatgttcaaatatcacta 69  Q
    ||||||||||||||||||||||||||||||    
T  23592387 ttgtctcaaatggatgttcaaatatcacta 23592416  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 69
Target Start/End: Original strand, 49131004 - 49131033
Alignment:
Q  40 ttgtctcaaatggatgttcaaatatcacta 69  Q
    ||||||||||||||||||||||||||||||    
T  49131004 ttgtctcaaatggatgttcaaatatcacta 49131033  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 19418081 - 19418049
Alignment:
Q  40 ttgtctcaaatggatgttcaaatatcactactc 72  Q
    |||||||||||||||||||||||||||| ||||    
T  19418081 ttgtctcaaatggatgttcaaatatcaccactc 19418049  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 178
Target Start/End: Original strand, 8381407 - 8381484
Alignment:
Q  105 acgcctcaggctgtttagcaattttttgacacaag----ataaactattgttttctgacacaagtaaaataatatata 178  Q
    |||||||||||| ||| ||||||||||||||||||    ||||| |||||||||||  ||||||||||||||||||||    
T  8381407 acgcctcaggctctttggcaattttttgacacaagtaagataaaatattgttttctaccacaagtaaaataatatata 8381484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 178
Target Start/End: Complemental strand, 3961579 - 3961515
Alignment:
Q  118 tttagcaattttttgacacaag----ataaactattgttttctgacacaagtaaaataatatata 178  Q
    ||||||||||||||||||||||    ||||| |||||||||||  | ||||||||||||||||||    
T  3961579 tttagcaattttttgacacaagtaagataaaatattgttttctacctcaagtaaaataatatata 3961515  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 69
Target Start/End: Original strand, 7701464 - 7701493
Alignment:
Q  40 ttgtctcaaatggatgttcaaatatcacta 69  Q
    ||||||||||||||||||||||||||||||    
T  7701464 ttgtctcaaatggatgttcaaatatcacta 7701493  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 72
Target Start/End: Complemental strand, 44894392 - 44894363
Alignment:
Q  43 tctcaaatggatgttcaaatatcactactc 72  Q
    ||||||||||||||||||||||||||||||    
T  44894392 tctcaaatggatgttcaaatatcactactc 44894363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 69
Target Start/End: Complemental strand, 46022405 - 46022376
Alignment:
Q  40 ttgtctcaaatggatgttcaaatatcacta 69  Q
    ||||||||||||||||||||||||||||||    
T  46022405 ttgtctcaaatggatgttcaaatatcacta 46022376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 5378777 - 5378809
Alignment:
Q  40 ttgtctcaaatggatgttcaaatatcactactc 72  Q
    |||||||||||||||||| ||||||||||||||    
T  5378777 ttgtctcaaatggatgtttaaatatcactactc 5378809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 10591302 - 10591334
Alignment:
Q  40 ttgtctcaaatggatgttcaaatatcactactc 72  Q
    ||||||||||||| |||||||||||||||||||    
T  10591302 ttgtctcaaatggttgttcaaatatcactactc 10591334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 32171056 - 32171024
Alignment:
Q  40 ttgtctcaaatggatgttcaaatatcactactc 72  Q
    ||||||||||||| |||||||||||||||||||    
T  32171056 ttgtctcaaatggttgttcaaatatcactactc 32171024  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 74
Target Start/End: Complemental strand, 41344590 - 41344556
Alignment:
Q  40 ttgtctcaaatggatgttcaaatatcactactctt 74  Q
    |||||||||||||||||||||||||||||||||||    
T  41344590 ttgtctcaaatggatgttcaaatatcactactctt 41344556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 73
Target Start/End: Complemental strand, 1370216 - 1370183
Alignment:
Q  40 ttgtctcaaatggatgttcaaatatcactactct 73  Q
    ||||||||||||||||||||||||||||||||||    
T  1370216 ttgtctcaaatggatgttcaaatatcactactct 1370183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 74
Target Start/End: Complemental strand, 34021093 - 34021059
Alignment:
Q  40 ttgtctcaaatggatgttcaaatatcactactctt 74  Q
    |||||||||||||||||||||||||||||||||||    
T  34021093 ttgtctcaaatggatgttcaaatatcactactctt 34021059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Complemental strand, 16336991 - 16336957
Alignment:
Q  40 ttgtctcaaatggatgttcaaatatcactactctt 74  Q
    ||||||||||||||||||||||||||| |||||||    
T  16336991 ttgtctcaaatggatgttcaaatatcattactctt 16336957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Complemental strand, 30906584 - 30906550
Alignment:
Q  40 ttgtctcaaatggatgttcaaatatcactactctt 74  Q
    |||| ||||||||||||||||||||||||||||||    
T  30906584 ttgtttcaaatggatgttcaaatatcactactctt 30906550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 74
Target Start/End: Complemental strand, 20719936 - 20719902
Alignment:
Q  40 ttgtctcaaatggatgttcaaatatcactactctt 74  Q
    |||||||||||||||||||||||||||||||||||    
T  20719936 ttgtctcaaatggatgttcaaatatcactactctt 20719902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 73
Target Start/End: Complemental strand, 40566137 - 40566104
Alignment:
Q  40 ttgtctcaaatggatgttcaaatatcactactct 73  Q
    ||||||||||||||||||||||||||||||||||    
T  40566137 ttgtctcaaatggatgttcaaatatcactactct 40566104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 69
Target Start/End: Original strand, 17625916 - 17625945
Alignment:
Q  40 ttgtctcaaatggatgttcaaatatcacta 69  Q
    ||||||||||||||||||||||||||||||    
T  17625916 ttgtctcaaatggatgttcaaatatcacta 17625945  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 11767911 - 11767867
Alignment:
Q  40 ttgtctcaaatggatgttcaaatatcactactcttgcatgaatac 84  Q
    |||||| |||||| |||||||||||||||||||||  ||||||||    
T  11767911 ttgtctaaaatggttgttcaaatatcactactcttaaatgaatac 11767867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 24431539 - 24431507
Alignment:
Q  40 ttgtctcaaatggatgttcaaatatcactactc 72  Q
    ||||||||||||| |||||||||||||||||||    
T  24431539 ttgtctcaaatggttgttcaaatatcactactc 24431507  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 73
Target Start/End: Original strand, 46948129 - 46948162
Alignment:
Q  40 ttgtctcaaatggatgttcaaatatcactactct 73  Q
    ||||||||||||||||||||||||||||||||||    
T  46948129 ttgtctcaaatggatgttcaaatatcactactct 46948162  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 7645475 - 7645443
Alignment:
Q  40 ttgtctcaaatggatgttcaaatatcactactc 72  Q
    |||||||||||||||||||||||||||||||||    
T  7645475 ttgtctcaaatggatgttcaaatatcactactc 7645443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 40610379 - 40610411
Alignment:
Q  40 ttgtctcaaatggatgttcaaatatcactactc 72  Q
    |||||||||||||||||||||||||||||||||    
T  40610379 ttgtctcaaatggatgttcaaatatcactactc 40610411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 28716293 - 28716327
Alignment:
Q  40 ttgtctcaaatggatgttcaaatatcactactctt 74  Q
    ||||||||||||| |||||||||||||||||||||    
T  28716293 ttgtctcaaatggttgttcaaatatcactactctt 28716327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Complemental strand, 43755607 - 43755573
Alignment:
Q  40 ttgtctcaaatggatgttcaaatatcactactctt 74  Q
    ||||||||||||||||||||||||||| |||||||    
T  43755607 ttgtctcaaatggatgttcaaatatcattactctt 43755573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 69
Target Start/End: Complemental strand, 24981707 - 24981678
Alignment:
Q  40 ttgtctcaaatggatgttcaaatatcacta 69  Q
    ||||||||||||||||||||||||||||||    
T  24981707 ttgtctcaaatggatgttcaaatatcacta 24981678  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 69
Target Start/End: Original strand, 46907126 - 46907155
Alignment:
Q  40 ttgtctcaaatggatgttcaaatatcacta 69  Q
    ||||||||||||||||||||||||||||||    
T  46907126 ttgtctcaaatggatgttcaaatatcacta 46907155  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 14714136 - 14714168
Alignment:
Q  40 ttgtctcaaatggatgttcaaatatcactactc 72  Q
    |||||||||||||||||||||||||||||||||    
T  14714136 ttgtctcaaatggatgttcaaatatcactactc 14714168  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 22390302 - 22390336
Alignment:
Q  40 ttgtctcaaatggatgttcaaatatcactactctt 74  Q
    |||||||||||||||||||||||||| ||||||||    
T  22390302 ttgtctcaaatggatgttcaaatatctctactctt 22390336  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 44189975 - 44190009
Alignment:
Q  40 ttgtctcaaatggatgttcaaatatcactactctt 74  Q
    ||||||| |||||||||||||||||||||||||||    
T  44189975 ttgtctcgaatggatgttcaaatatcactactctt 44190009  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 73
Target Start/End: Complemental strand, 2013206 - 2013173
Alignment:
Q  40 ttgtctcaaatggatgttcaaatatcactactct 73  Q
    |||||||||||||||||| |||||||||||||||    
T  2013206 ttgtctcaaatggatgttaaaatatcactactct 2013173  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 73
Target Start/End: Original strand, 15141600 - 15141633
Alignment:
Q  40 ttgtctcaaatggatgttcaaatatcactactct 73  Q
    ||||||||||||||||||||||| ||||||||||    
T  15141600 ttgtctcaaatggatgttcaaatgtcactactct 15141633  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 69
Target Start/End: Complemental strand, 25270720 - 25270691
Alignment:
Q  40 ttgtctcaaatggatgttcaaatatcacta 69  Q
    ||||||||||||||||||||||||||||||    
T  25270720 ttgtctcaaatggatgttcaaatatcacta 25270691  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 23344910 - 23344878
Alignment:
Q  40 ttgtctcaaatggatgttcaaatatcactactc 72  Q
    |||||||||||| ||||||||||||||||||||    
T  23344910 ttgtctcaaatgaatgttcaaatatcactactc 23344878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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