View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1605_low_44 (Length: 219)
Name: NF1605_low_44
Description: NF1605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1605_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 15 - 203
Target Start/End: Original strand, 38743679 - 38743868
Alignment:
| Q |
15 |
atgaaacaattgtagcttcaaagtatgaacctacaaacccttcttctttgctgcatacttcaactttatctcctaccttgtaatcaactctctttaccgg |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
38743679 |
atgaaacaattgtagcttcaaagtatgaacctacaaacccttcttctttgctgcatacttctactttatctcctaccttgtaatcaactctcttcaccgg |
38743778 |
T |
|
| Q |
115 |
tggacgcatggttgcacaagatcaagaatctattggaagaattagagagaaagagacacgaaccg-tttttgagaatgaagtgaagtaaa |
203 |
Q |
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| T |
38743779 |
tggacgcatggttgcacaagatcaagaatctatcggaagaattagagagaaagagacacgaaccgttttttgaatatgaagtgaagtaaa |
38743868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 15 - 203
Target Start/End: Complemental strand, 38788728 - 38788544
Alignment:
| Q |
15 |
atgaaacaattgtagcttcaaagtatgaacctacaaacccttcttctttgctgcatacttcaactttatctcctaccttgtaatcaactctctttaccgg |
114 |
Q |
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| T |
38788728 |
atgaaacaattgtagcttcaaagtacgaacctacaaacccttcttctttgctgcatacttcaactttatctcctaccttgtaatcaactctcttcaccgg |
38788629 |
T |
|
| Q |
115 |
tggacgcatggttgcacaagatcaagaatctattggaagaattagagagaaagagacacgaaccgtttttgagaatgaagtgaagtaaa |
203 |
Q |
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| T |
38788628 |
tggacgcatggttgcacaagatcaagaacctattggaagagttagagaga----gatatgaaccgtttttgagaatgaagtgaagtaaa |
38788544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 15 - 146
Target Start/End: Complemental strand, 38782556 - 38782425
Alignment:
| Q |
15 |
atgaaacaattgtagcttcaaagtatgaacctacaaacccttcttctttgctgcatacttcaactttatctcctaccttgtaatcaactctctttaccgg |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||| ||||| |||||||| | || |
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| T |
38782556 |
atgaaacaattgtagcttcaaagtatgaacctacaaacccttcatcttcgctgcatacttctactttatctcctaccttataatctactctcttctctgg |
38782457 |
T |
|
| Q |
115 |
tggacgcatggttgcacaagatcaagaatcta |
146 |
Q |
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| T |
38782456 |
aggacgcatgattgcacaagatcaagaatcta |
38782425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 15 - 146
Target Start/End: Original strand, 30963095 - 30963226
Alignment:
| Q |
15 |
atgaaacaattgtagcttcaaagtatgaacctacaaacccttcttctttgctgcatacttcaactttatctcctaccttgtaatcaactctctttaccgg |
114 |
Q |
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|
||||||||||||| |||||||| |||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||| |||||||| | || |
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| T |
30963095 |
atgaaacaattgtggcttcaaaatatgaacctacaaacccttcttctttactacatacttctactttatctcctaccttgtaatccactctcttcattgg |
30963194 |
T |
|
| Q |
115 |
tggacgcatggttgcacaagatcaagaatcta |
146 |
Q |
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|||||||||||||||| |||||||||||||| |
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| T |
30963195 |
tggacgcatggttgcaatagatcaagaatcta |
30963226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 146
Target Start/End: Complemental strand, 30897349 - 30897239
Alignment:
| Q |
36 |
agtatgaacctacaaacccttcttctttgctgcatacttcaactttatctcctaccttgtaatcaactctctttaccggtggacgcatggttgcacaaga |
135 |
Q |
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|||| ||||| | |||||| |||||||| ||||||||||| ||||||||||||| |||||||| |||||| | | |||||||||||||| | |||| |
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| T |
30897349 |
agtacgaaccgaaaaacccctcttctttactgcatacttctactttatctcctattttgtaatccactctcctcattggtggacgcatggtggaacaatg |
30897250 |
T |
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| Q |
136 |
tcaagaatcta |
146 |
Q |
| |
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||||||||||| |
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| T |
30897249 |
tcaagaatcta |
30897239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 24827548 - 24827620
Alignment:
| Q |
34 |
aaagtatgaacctacaaacccttcttctttgctgcatacttcaactttatctcctaccttgtaatcaactctc |
106 |
Q |
| |
|
||||||||| ||| |||||||| ||| ||| || ||||||||||||| |||||| ||||||||||||||||| |
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| T |
24827548 |
aaagtatgatcctctaaaccctttttcattgatggatacttcaactttgtctccttccttgtaatcaactctc |
24827620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 103
Target Start/End: Original strand, 23368495 - 23368562
Alignment:
| Q |
36 |
agtatgaacctacaaacccttcttctttgctgcatacttcaactttatctcctaccttgtaatcaact |
103 |
Q |
| |
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|||| ||||||||||| |||||||||||| |||||||||||||| ||| || | |||||||||||| |
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| T |
23368495 |
agtacgaacctacaaatatttcttctttgctacatacttcaactttgtctacttctttgtaatcaact |
23368562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 5963690 - 5963760
Alignment:
| Q |
17 |
gaaacaattgtagcttcaaagtatgaacctacaaacccttcttctttgctgcatacttcaactttatctcc |
87 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
5963690 |
gaaacaattgtagcttcaaagtatgaacccacaaacccttcttctttgctgcatacttccactttgtctcc |
5963760 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 30 - 135
Target Start/End: Complemental strand, 2914655 - 2914550
Alignment:
| Q |
30 |
cttcaaagtatgaacctacaaacccttcttctttgctgcatacttcaactttatctcctaccttgtaatcaactctctttaccggtggacgcatggttgc |
129 |
Q |
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||||| |||| |||||||| | ||| |||||||||||||||||||| ||||| ||||||||||||||||| ||||||||| || ||||||||| |||| |
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| T |
2914655 |
cttcatagtaagaacctacgagcccatcttctttgctgcatacttctactttgtctcctaccttgtaatcgactctctttgttggcggacgcatgtttgc |
2914556 |
T |
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| Q |
130 |
acaaga |
135 |
Q |
| |
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| |||| |
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| T |
2914555 |
aaaaga |
2914550 |
T |
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