View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1605_low_45 (Length: 215)

Name: NF1605_low_45
Description: NF1605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1605_low_45
NF1605_low_45
[»] chr5 (2 HSPs)
chr5 (16-108)||(40441466-40441558)
chr5 (106-199)||(40441185-40441278)
[»] chr7 (1 HSPs)
chr7 (45-108)||(12664890-12664953)


Alignment Details
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 40441558 - 40441466
Alignment:
Q  16 gcaattaggatggctactgcataaaactcggaagtctcaaattcaagagtgtactaaaacttatggagcatcatcaataatttcaagctacaa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40441558 gcaattaggatggctactgcataaaactcggaagtctcaaattcaagagtgtactaaaacttatggagcatcatcaataatttcaagctacaa 40441466  T

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Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 40441278 - 40441185
Alignment:
Q  106 caatttgatgaagataccggtgaaaaccactacacatgtagggagcatttaattgactacaccctacccctccggtaacctacataggagtaat 199  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40441278 caatttgatgaagataccagtgaaaaccactacacatgtagggagcatttaattgactacaccctacccctccggtaacctacataggagtaat 40441185  T

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Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 45 - 108
Target Start/End: Original strand, 12664890 - 12664953
Alignment:
Q  45 ggaagtctcaaattcaagagtgtactaaaacttatggagcatcatcaataatttcaagctacaa 108  Q
    |||||||||||||||||||||||| |||| ||||||||||||| ||||||| ||||| ||||||    
T  12664890 ggaagtctcaaattcaagagtgtagtaaagcttatggagcatcgtcaataacttcaacctacaa 12664953  T

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