View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1605_low_5 (Length: 441)
Name: NF1605_low_5
Description: NF1605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1605_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 39 - 424
Target Start/End: Complemental strand, 32992310 - 32991924
Alignment:
| Q |
39 |
tagaaatagggttagtctggggcatcaagtctcggcactgacttcaattccgatatttatatacaatttagtttgaatttagaaatattgagttcggtga |
138 |
Q |
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| T |
32992310 |
tagaaaaagggttagtctggggcatctagtctcaacactgactttaattccgatacttatatacaatttggtttgaatttagaaatattgagttcagtga |
32992211 |
T |
|
| Q |
139 |
atcgactaaatatatatata--gttagattttaaataggaaaaaatcaactaaatttgtagttgtatgnnnnnnnnaagggttgtagttacattttaaat |
236 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
32992210 |
atcgactaaatatatatatatagttagattttaaataggaaaaaatcaactaaatttgtagttgtatgttttttttaagggttgtagttatattttaaat |
32992111 |
T |
|
| Q |
237 |
actgttaaactattgtgtaaatttgaatttaaattnnnnnnnngagttgagtagttgagaataaatttatctaaacaagttccaaccaaattcagttgtt |
336 |
Q |
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|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32992110 |
accgttaaactattgtgtaaatttgaatttaaattaaaaaaa-gagttgagtagttgagaataaatttatctaaacaagttccaaccaaattcagttgtt |
32992012 |
T |
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| Q |
337 |
catgatagttaaaaaatatctttttctattaggtatatctagccaagacgtaattgagattgggtgatagagagacatatatatgagt |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32992011 |
catgatagttaaaaaatatctttttctattaggtatatctagccaagacgtaattgagattgggtgatagagagacatatatatgagt |
32991924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 92
Target Start/End: Original strand, 35147745 - 35147801
Alignment:
| Q |
37 |
tttagaaatagggtt-agtctggggcatcaagtctcggcactgacttcaattccgat |
92 |
Q |
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|||| |||||||||| ||||||||||||||||||| ||||||||| ||||||||| |
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| T |
35147745 |
tttaaaaatagggttcagtctggggcatcaagtcttaacactgactttaattccgat |
35147801 |
T |
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