View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1605_low_6 (Length: 433)
Name: NF1605_low_6
Description: NF1605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1605_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 12 - 281
Target Start/End: Complemental strand, 47426368 - 47426089
Alignment:
| Q |
12 |
atgatttatatgaagaggtgaggagaaattagtagaggatggagatcgaaagggaggatnnnnnnnttaatgatggtgttaatgtggaggttacggtgga |
111 |
Q |
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| T |
47426368 |
atgatttatatgaaggggtgaggagaaattagtagaggatggagatcgaaagggaggataaaaaaattaatgatggtgttaatgtggaggttacggtgga |
47426269 |
T |
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| Q |
112 |
atataatgacaccaatagtacttcatatatatgtttaataaaggttatgtctttgaaacacaacactaaatacaaat-----------caaatttacacg |
200 |
Q |
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| T |
47426268 |
atataatgacaccaatagtacttcatatatatgtttaataaaggttatgtctttgaaacacaacactaaatacaaattaaaaacaagacaaatttacacg |
47426169 |
T |
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| Q |
201 |
cctaaaatgattgttattaatgaggatcgattatgttaatatttttgtagtgaattttgatcgtaataatgtatagtttaa |
281 |
Q |
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| T |
47426168 |
cctaaaatgattgttattaatgaggatcga-tatgttaatatttttgtagtgaattttgatcgtaataatgtttagtttaa |
47426089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 293 - 410
Target Start/End: Complemental strand, 47426007 - 47425890
Alignment:
| Q |
293 |
ggcattgtgcgtgatatgccaagacgtatatataaataacaattgttttatcattttctctaggtttttagatgaactaaatctaaatccttgtcacgaa |
392 |
Q |
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| T |
47426007 |
ggcactgtgcgtgatatgccaagacgtatatataaataacaattattttatcattttctctaggtttttagatgaactaaatctaaatccttgtcatgaa |
47425908 |
T |
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| Q |
393 |
caactaattcatgtggtc |
410 |
Q |
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| T |
47425907 |
caactaattcatgtggtc |
47425890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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