View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1605_low_7 (Length: 429)
Name: NF1605_low_7
Description: NF1605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1605_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 9 - 413
Target Start/End: Complemental strand, 39350955 - 39350551
Alignment:
| Q |
9 |
agcagagaagaaaacacttactaagagaacactcatccaaagtccgtggaacctcctttggaacaagagcttcttctgccttaactggttggagaatctt |
108 |
Q |
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| T |
39350955 |
agcagagaagaaaacacttactaagagaacactcatccaaagtccgtggaacctcctttggaacaagagcttcttctgccttaactggttggagaatctt |
39350856 |
T |
|
| Q |
109 |
cgaataattttgacctaataatatatcaacttatgtaaccaaggtttgaaatgaaatctatatatttgacctaataatatatcaaattatgttattgagg |
208 |
Q |
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| T |
39350855 |
cgaataattttgacctaacaatatatcaacttatgtaaacaaggtttgaaatgaaatctatatatttgacctaataatatatcaaattatgttattgagg |
39350756 |
T |
|
| Q |
209 |
attgaaatgaaatggaatgcatagttttgatgaaagagtaatgcaatcatcatgttacaaattaaagtgaagtagagaaaaaacacttactagaagagta |
308 |
Q |
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| T |
39350755 |
attgaaatgaaatggaatgcatagttttgatgaaagagtaatgcaatcatcatgttacaaattaaagtgaagtagagaaaaaacacttactagaagagta |
39350656 |
T |
|
| Q |
309 |
attctcaaaatcctttggaacctcgttaggaagaggagctttttgaaccataactggttggtgattctcattagaattttgacctaataatccattaacg |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39350655 |
attctcaaaatcctttggaacctcgttaggaagaggagctttttgaaccataactggttggtgattctcattagaattttgacctaataatccattaacg |
39350556 |
T |
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| Q |
409 |
taagt |
413 |
Q |
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| T |
39350555 |
taagt |
39350551 |
T |
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