View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1605_low_9 (Length: 392)

Name: NF1605_low_9
Description: NF1605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1605_low_9
NF1605_low_9
[»] chr5 (11 HSPs)
chr5 (14-376)||(41702643-41703005)
chr5 (54-184)||(41469655-41469785)
chr5 (214-376)||(41469881-41470052)
chr5 (113-184)||(41499628-41499699)
chr5 (122-183)||(41509401-41509462)
chr5 (103-183)||(41499525-41499605)
chr5 (116-184)||(41515440-41515508)
chr5 (122-184)||(41519624-41519686)
chr5 (310-365)||(41509724-41509779)
chr5 (310-365)||(41519950-41520005)
chr5 (214-265)||(41524534-41524585)
[»] chr7 (3 HSPs)
chr7 (233-365)||(16638302-16638434)
chr7 (233-365)||(17457204-17457336)
chr7 (233-365)||(17595878-17596010)


Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 14 - 376
Target Start/End: Complemental strand, 41703005 - 41702643
Alignment:
Q  14 ttctttactgtttcctccaattctccaattttaatctgtgattcaccaatcatttttcttaacacacccaattcaatatcatcttcctcccattttttct 113  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41703005 ttctttactgtttcctccaattctccaattttactctgtaattcaccaatcatttttcttaacacacccaattcaatatcatcttcctcccattttttct 41702906  T
Q  114 ttaacttcttcaactccaaaacttcattctctaattcaacaatctttcttcttaacacatcaacttcattgttcttcttttctaacgcttcattactttt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41702905 ttaacttcttcaactccaaaacttcattctctaattcaacaatctttcttcttaacacatcaacttcattgttcttcttttctaacgcttcattactttt 41702806  T
Q  214 tctatttaccttaacctctttcaagagagcttcataattttcttgcactttcgaacatatttcttctctttttctaaactcaaactcagcatgcaacctt 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41702805 tctatttaccttaacctctttcaagagagcttcataattttcttgcactttcgaacatatttcttctctttttctaaactcaaactcagcatgcaacctt 41702706  T
Q  314 gaaagtatctccatgtcaagctgctctttaagctttagtctctccatttcaaagtcttgttgc 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41702705 gaaagtatctccatgtcaagctgctctttaagctttagtctctccatttcaaagtcttgttgc 41702643  T

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Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 54 - 184
Target Start/End: Original strand, 41469655 - 41469785
Alignment:
Q  54 attcaccaatcatttttcttaacacacccaattcaatatcatcttcctcccattttttctttaacttcttcaactccaaaacttcattctctaattcaac 153  Q
    ||||||||  ||||||||||||  ||||||||||||| ||||||||||||||||||||||| | ||| || ||||| |||||||||| ||||||||||||    
T  41469655 attcaccagacatttttcttaattcacccaattcaatgtcatcttcctcccattttttcttaatcttgtttaactctaaaacttcatcctctaattcaac 41469754  T
Q  154 aatctttcttcttaacacatcaacttcattg 184  Q
    ||||||| ||||||  |||||||||||||||    
T  41469755 aatctttgttcttattacatcaacttcattg 41469785  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 376
Target Start/End: Original strand, 41469881 - 41470052
Alignment:
Q  214 tctatttaccttaacctctttcaagagagcttcataattttcttgcactttcgaacat---------atttcttctctttttctaaactcaaactcagca 304  Q
    ||||||||||||||| |||||||| |||||||||||| ||||||  ||||||  || |         ||||| ||||||||  |||||||| ||||||||    
T  41469881 tctatttaccttaacttctttcaaaagagcttcataactttcttttactttcttacctttctcacaaatttcctctcttttcttaaactcagactcagca 41469980  T
Q  305 tgcaaccttgaaagtatctccatgtcaagctgctctttaagctttagtctctccatttcaaagtcttgttgc 376  Q
    |  | |||||||||| |||| | || || || |||| ||||||| ||||||||||||||||||  |||||||    
T  41469981 tatacccttgaaagtctctctaagtgaaactcctctctaagcttaagtctctccatttcaaagctttgttgc 41470052  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 41499628 - 41499699
Alignment:
Q  113 tttaacttcttcaactccaaaacttcattctctaattcaacaatctttcttcttaacacatcaacttcattg 184  Q
    ||||| ||| |||||||||||| ||||   |||||||||||||||||| ||||||||||| |||||||||||    
T  41499628 tttaatttcctcaactccaaaatttcagattctaattcaacaatctttgttcttaacacaccaacttcattg 41499699  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 183
Target Start/End: Original strand, 41509401 - 41509462
Alignment:
Q  122 ttcaactccaaaacttcattctctaattcaacaatctttcttcttaacacatcaacttcatt 183  Q
    |||||||||||||||||||| |||||||||||  ||||| ||||||||| ||||| ||||||    
T  41509401 ttcaactccaaaacttcattgtctaattcaaccttcttttttcttaacatatcaagttcatt 41509462  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 103 - 183
Target Start/End: Original strand, 41499525 - 41499605
Alignment:
Q  103 ccattttttctttaacttcttcaactccaaaacttcattctctaattcaacaatctttcttcttaacacatcaacttcatt 183  Q
    |||||||||||| |||||| |||||||||||||||||| |||||||| | ||||| ||  ||||| |||| ||| ||||||    
T  41499525 ccattttttcttcaacttcctcaactccaaaacttcatgctctaatttaccaatcatttctcttagcacaacaagttcatt 41499605  T

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Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 41515440 - 41515508
Alignment:
Q  116 aacttcttcaactccaaaacttcattctctaattcaacaatctttcttcttaacacatcaacttcattg 184  Q
    |||||| |||||||||||| ||||  |||||||||| || |||||||||||||||||| || |||||||    
T  41515440 aacttcctcaactccaaaatttcagactctaattcaccattctttcttcttaacacataaatttcattg 41515508  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 41519624 - 41519686
Alignment:
Q  122 ttcaactccaaaacttcattctctaattcaacaatctttcttcttaacacatcaacttcattg 184  Q
    |||||||||||||||||||| ||||||||| |  ||||| ||||||||| ||||| |||||||    
T  41519624 ttcaactccaaaacttcattgtctaattcacccttcttttttcttaacatatcaagttcattg 41519686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 310 - 365
Target Start/End: Original strand, 41509724 - 41509779
Alignment:
Q  310 ccttgaaagtatctccatgtcaagctgctctttaagctttagtctctccatttcaa 365  Q
    ||||| |||| ||||||| ||||||| ||||| |||||||||||||||||| ||||    
T  41509724 ccttgcaagtttctccatttcaagctcctcttgaagctttagtctctccatatcaa 41509779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 310 - 365
Target Start/End: Original strand, 41519950 - 41520005
Alignment:
Q  310 ccttgaaagtatctccatgtcaagctgctctttaagctttagtctctccatttcaa 365  Q
    ||||| |||| ||||||| | ||||| ||||| |||||||||||||||||||||||    
T  41519950 ccttgcaagtttctccattttaagctcctcttgaagctttagtctctccatttcaa 41520005  T

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Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 265
Target Start/End: Original strand, 41524534 - 41524585
Alignment:
Q  214 tctatttaccttaacctctttcaagagagcttcataattttcttgcactttc 265  Q
    |||||| |||||||| |||||||| |||||||||||| ||||||| ||||||    
T  41524534 tctattcaccttaacttctttcaaaagagcttcataactttcttgaactttc 41524585  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 365
Target Start/End: Complemental strand, 16638434 - 16638302
Alignment:
Q  233 ttcaagagagcttcataattttcttgcactttcgaacatatttcttctctttttctaaactcaaactcagcatgcaaccttgaaagtatctccatgtcaa 332  Q
    ||||||||||||||||||  ||| ||  |||||| |||   ||| ||||||||  |||||||   ||||||||| ||||||| |||| ||||||| | ||    
T  16638434 ttcaagagagcttcataacattcctgatctttcggacaaggttcctctcttttcttaaactctttctcagcatgtaaccttgcaagtttctccatttgaa 16638335  T
Q  333 gctgctctttaagctttagtctctccatttcaa 365  Q
    ||| | ||| ||||||| |||||  ||||||||    
T  16638334 gctccccttgaagcttttgtctcggcatttcaa 16638302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 365
Target Start/End: Original strand, 17457204 - 17457336
Alignment:
Q  233 ttcaagagagcttcataattttcttgcactttcgaacatatttcttctctttttctaaactcaaactcagcatgcaaccttgaaagtatctccatgtcaa 332  Q
    ||||||||||||||||||  ||| ||  |||||| |||   ||| ||||||||  |||||||   ||||||||| ||||||| |||| ||||||| | ||    
T  17457204 ttcaagagagcttcataacattcctgatctttcggacaaggttcctctcttttcttaaactctttctcagcatgtaaccttgcaagtttctccatttgaa 17457303  T
Q  333 gctgctctttaagctttagtctctccatttcaa 365  Q
    ||| | ||| ||||||| |||||  ||||||||    
T  17457304 gctccccttgaagcttttgtctcggcatttcaa 17457336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 365
Target Start/End: Complemental strand, 17596010 - 17595878
Alignment:
Q  233 ttcaagagagcttcataattttcttgcactttcgaacatatttcttctctttttctaaactcaaactcagcatgcaaccttgaaagtatctccatgtcaa 332  Q
    ||||||||||||||||||  ||| ||  |||||| |||   ||| ||||||||  |||||||   ||||||||| ||||||| |||| ||||||| | ||    
T  17596010 ttcaagagagcttcataacattcctgatctttcggacaaggttcctctcttttcttaaactctttctcagcatgtaaccttgcaagtttctccatttgaa 17595911  T
Q  333 gctgctctttaagctttagtctctccatttcaa 365  Q
    ||| | ||| ||||||| |||||  ||||||||    
T  17595910 gctccccttgaagcttttgtctcggcatttcaa 17595878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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