View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16060_high_12 (Length: 294)
Name: NF16060_high_12
Description: NF16060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16060_high_12 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 51360090 - 51360383
Alignment:
| Q |
1 |
tgaagaaaagggtacctgtaaaatactcaacaatggactctcccccggaattcgtttacgatagaatctctttcccgcaacaatgcaaataagtgcagag |
100 |
Q |
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| T |
51360090 |
tgaagaaaagggtacctgtaaaatactcaacaatggactctccccaggaattcgtttacgatagaatctctttccagcaacaatgcaaataagtgcagag |
51360189 |
T |
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| Q |
101 |
gcagaacatgagagagatataagaaaacctttgtaccaatcgaagattgtgctaacataaactacaaaagtgacacctaagctagcaccaattgtaatac |
200 |
Q |
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| T |
51360190 |
gcagaacatgagagagatataagaaaacctttgtaccaatcgaagattgtgctaacataaactacaaaagtgacacctaagctagcaccaattgtaatac |
51360289 |
T |
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| Q |
201 |
taaacaaaaaccaattgaagaagcttgctagttggagatattcttttggattcatatcatcaaattgatctgctcctagagcaggaacacaacc |
294 |
Q |
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| T |
51360290 |
taaacaaaaaccaattgaagaagcttgctagttggagatattcttttggattcatatcatcaaattgatctgctcctagagcaggaacacaacc |
51360383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 51350750 - 51350919
Alignment:
| Q |
15 |
cctgtaaaatactcaacaatggactctcccccggaattcgtttacgatagaatctctttcccgcaacaatgcaaataagtgcagaggcagaacatgagag |
114 |
Q |
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| T |
51350750 |
cctgtaaaatacccaacaatggactccctcctggattcggggtacaatagaatctctttccagaaacaatgcaaattagtgcagcagaagcatataagag |
51350849 |
T |
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| Q |
115 |
agatataagaaaacctttgtaccaatcgaagattgtgctaacataaactacaaaagtgacacctaagcta |
184 |
Q |
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| T |
51350850 |
agatataagaaaacctttgtaccatttgaattgtgatctaacatgaactacaaaggtggcacctaagcta |
51350919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 218 - 291
Target Start/End: Original strand, 51350938 - 51351011
Alignment:
| Q |
218 |
aagaagcttgctagttggagatattcttttggattcatatcatcaaattgatctgctcctagagcaggaacaca |
291 |
Q |
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| T |
51350938 |
aagaagctagctagttggagacggtcctttggattcttgtcatcaaattgatcagctcctagagcaggaacaca |
51351011 |
T |
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