View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16060_high_13 (Length: 273)
Name: NF16060_high_13
Description: NF16060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16060_high_13 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0259 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 10769741 - 10770013
Alignment:
| Q |
1 |
ccttctgaaattttctgaaacctttgaataaaattactgcatgacattctattttgttgatgataatacaattagattctatggttcaaaagttgaaaag |
100 |
Q |
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| T |
10769741 |
ccttctgaaattttctgaaacctttgaataaaattactgcatgacattctattttgttgataataatacaattagattctatggttcaaaagttgaaaag |
10769840 |
T |
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| Q |
101 |
aaagtcctaagtccttaaaatgaacgcagaaaaggctatgaataactgacatagacacgaacactacacactacactgtcatgtcacatgtaagaattca |
200 |
Q |
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| T |
10769841 |
aaagtcctaagtccttaaaatgaacgcagaaaaggctatgaataactgacatagacacgaacactacacactacactgtcatgtcacatgtaagaattca |
10769940 |
T |
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| Q |
201 |
gaaagatgatataattgaatttaaccacgtgtgtctgacaccagatacaccttcaatatgaagtgtcggtgct |
273 |
Q |
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| T |
10769941 |
gaaagatgatataattgaatttaaccatgtgtgtctgacaccagatacaccttcaatatgaagtgtcggtgct |
10770013 |
T |
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Back To:
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Target: scaffold0259 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 141 - 262
Target Start/End: Complemental strand, 15241 - 15114
Alignment:
| Q |
141 |
aataactgacatagacacgaacactacacactacac------tgtcatgtcacatgtaagaattcagaaagatgatataattgaatttaaccacgtgtgt |
234 |
Q |
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| T |
15241 |
aataactgacatagacatggaccctacacactacaccgacactgacatgtcacatgtaatagttcaaaaatatgatataattgaatttaacaacgtgtgt |
15142 |
T |
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| Q |
235 |
ctgacaccagatacaccttcaatatgaa |
262 |
Q |
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| T |
15141 |
ccaacaccaaatacaccttcaatatgaa |
15114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 141 - 225
Target Start/End: Complemental strand, 35045219 - 35045136
Alignment:
| Q |
141 |
aataactgacatagacacgaacactacacactacactgtcatgtcacatgtaagaattcagaaagatgatataattgaatttaac |
225 |
Q |
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||||||||||||||||| | |||||||| | |||||| |||||||||||||| | |||| ||| |||||||||||||| ||||| |
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| T |
35045219 |
aataactgacatagacatggacactacat-cgacactgacatgtcacatgtaatagttcaaaaatatgatataattgaagttaac |
35045136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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