View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16060_high_18 (Length: 229)
Name: NF16060_high_18
Description: NF16060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16060_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 5e-83; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 33594102 - 33594309
Alignment:
| Q |
17 |
ataacactctcagttatcattacttgtatcgttgctgcatctagtggactcatttttggatatgacattgggatttcaggttttcttccnnnnnnnnnnn |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33594102 |
ataacactctcagttatcattacttgtatcgttgctgcatctagtggactcatttttggatatgacattgggatttcaggttttcttcctttttgttttt |
33594201 |
T |
|
| Q |
117 |
ncattataaagtatccaattagaccatgttttttgctttctaaagtatcttgtattctgctacatcaatctttgctcaaaaattgaatgatttgttcatc |
216 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
33594202 |
tcattataaagtatccaattagaccatgttttttgctttctaaagtatcttgtattctgctacatcaatcattgctcaaaaattgaatgatttgatcata |
33594301 |
T |
|
| Q |
217 |
tcactcga |
224 |
Q |
| |
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| |||||| |
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|
| T |
33594302 |
taactcga |
33594309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 33601233 - 33601440
Alignment:
| Q |
17 |
ataacactctcagttatcattacttgtatcgttgctgcatctagtggactcatttttggatatgacattgggatttcaggttttcttccnnnnnnnnnnn |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33601233 |
ataacactctcagttatcattacttgtatcgttgctgcatctagtggactcatttttggatatgacattgggatttcaggttttcttcctttttgttttt |
33601332 |
T |
|
| Q |
117 |
ncattataaagtatccaattagaccatgttttttgctttctaaagtatcttgtattctgctacatcaatctttgctcaaaaattgaatgatttgttcatc |
216 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
33601333 |
tcattataaagtatccaattagaccatgttttttgctttctaaagtatcttgtattctgctacatcaatcattgctcaaaaattgaatgatttgatcata |
33601432 |
T |
|
| Q |
217 |
tcactcga |
224 |
Q |
| |
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| |||||| |
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| T |
33601433 |
taactcga |
33601440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 33586930 - 33587137
Alignment:
| Q |
17 |
ataacactctcagttatcattacttgtatcgttgctgcatctagtggactcatttttggatatgacattgggatttcaggttttcttccnnnnnnnnnnn |
116 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33586930 |
ataacactctcggttatcattacttgtatcgttgctgcatctagtggactcatttttggatatgacattgggatttcaggttttcttcctttttgttttt |
33587029 |
T |
|
| Q |
117 |
ncattataaagtatccaattagaccatgttttttgctttctaaagtatcttgtattctgctacatcaatctttgctcaaaaattgaatgatttgttcatc |
216 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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|
| T |
33587030 |
tcattataaagtatccaattagaccatgttttttgctttctaaagtatcttgtattctgctacatcaatcattgctcaaaaattgaatgatttgatcata |
33587129 |
T |
|
| Q |
217 |
tcactcga |
224 |
Q |
| |
|
| |||||| |
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|
| T |
33587130 |
taactcga |
33587137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 33561697 - 33561780
Alignment:
| Q |
17 |
ataacactctcagttatcattacttgtatcgttgctgcatctagtggactcatttttggatatgacattgggatttcaggtttt |
100 |
Q |
| |
|
||||||||||||||| |||| ||||| || ||||| |||||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
33561697 |
ataacactctcagttgtcatcacttgcattgttgcagcatctagtggactcatttttggatatgaccttggaatttcaggtttt |
33561780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 33607998 - 33608078
Alignment:
| Q |
18 |
taacactctcagttatcattacttgtatcgttgctgcatctagtggactcatttttggatatgacattgggatttcaggtt |
98 |
Q |
| |
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||||||| ||| | |||||||| || ||||||||||| || ||||| || ||||||||||||||||||| |||||||||| |
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| T |
33607998 |
taacactttcaatcatcattacatgcatcgttgctgcttccagtggtcttctttttggatatgacattggaatttcaggtt |
33608078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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