View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16060_high_21 (Length: 212)
Name: NF16060_high_21
Description: NF16060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16060_high_21 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 11526601 - 11526427
Alignment:
| Q |
20 |
atagtaggagctttaaggcgatgaatgttaacattgaataatttgaggacggtaaagtcacagattgagttgttagaagccttgtttgttaagtttccag |
119 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11526601 |
atagtaggagctttagggcgatgaatgttaacattgaataatttgaggatggtaaagtcacggattgagttgttagaagccttgtttgttaagtttccag |
11526502 |
T |
|
| Q |
120 |
tgagggaagtgttggagatgatatctgagatagcagacttccaatggatcaacttattactaaaccttgattcat |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11526501 |
tgagggaagtgttggagatgatatctgagatagcagacttccaatggatcaacttattactaaaccttgattcat |
11526427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University