View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16060_high_4 (Length: 412)
Name: NF16060_high_4
Description: NF16060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16060_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 165 - 402
Target Start/End: Complemental strand, 14765093 - 14764856
Alignment:
| Q |
165 |
atgatattgaagtctatcgattcgggacacctacctattcacacactaaatccaaaagtgttaggcatgagggtgcgtattggaaaaaactcatgtctca |
264 |
Q |
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| T |
14765093 |
atgatattgaagtctatcaattcgggacacctacctattcacacactaaatccaaaagtgttaggcatgagggtgcgtattggaaaaaactcatgtctca |
14764994 |
T |
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| Q |
265 |
caaaggagggatatgactcttactaataatttataaatagaagcactcctcaccttacaaagctggtggtttattgggggttgtgatagaaccaaatttc |
364 |
Q |
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| T |
14764993 |
cataggagggatatgactcttactaataatttataaatagaagcactcctcaccttacaaagctggtggtttatggggggttgtgatagatccaaatttc |
14764894 |
T |
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| Q |
365 |
aacatggtatcaaagcttattgattcgagccacctatg |
402 |
Q |
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| T |
14764893 |
aacatggtatcaaagcttattgattcgagccacctatg |
14764856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 14765342 - 14765270
Alignment:
| Q |
6 |
attattagctctaaaaaatttcttgaaaatatagtacggtctttgtattttttgtataagatcattgtagtgt |
78 |
Q |
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| T |
14765342 |
attattagctctacaaaatttcttgaaaatatagtacgatctttgtattttttgtataagatcattgtagtgt |
14765270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 14765270 - 14765214
Alignment:
| Q |
112 |
tgactaaactcaggtgctcttcaagactaagtgtgagagaaagttgtcaaaaaatga |
168 |
Q |
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| T |
14765270 |
tgactaaactcaggtgctcttcaagactaagtgtgagagaaagttgtcaaaaaatga |
14765214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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