View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16060_high_5 (Length: 386)
Name: NF16060_high_5
Description: NF16060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16060_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 20 - 375
Target Start/End: Complemental strand, 47242784 - 47242432
Alignment:
| Q |
20 |
cccaccaaaggccatagatttctgccaaatcactgataacacatatgatcttgacgaggtaatgtagtattcttttatctggtcttgaatcaaattttgt |
119 |
Q |
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| T |
47242784 |
cccaccaaaggccatagatttctgccaaatcactgataacacatatgatcttgacgaggtaatgtagtattcttttatctggtcttgaatcaaattttgt |
47242685 |
T |
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| Q |
120 |
tcttgattgaattattttatttcannnnnnnnctttcttgtattgctttgtttctcatgtatgttgtttgttgttaatataggttttgaagatggaagct |
219 |
Q |
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| T |
47242684 |
tcttgattgaataattttatttcatttttt---tttcttgtattgctttgtttctcatgtatgttgtttgttgttaatataggttttgaagatggaagct |
47242588 |
T |
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| Q |
220 |
gacatactcaaaaccctgaactttgaaatgggcaaccctaatgtcatcacatttctaaagtaaatacattttttattgtaaatttgaatatctaaagcct |
319 |
Q |
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| T |
47242587 |
gacatactcaaaaccctgaactttgaaatgggcaaccctaatgtcatcacatttctaaagtaaatacattttttattgtgaatttgaatatctaaagcct |
47242488 |
T |
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| Q |
320 |
tgttgaaatgaagttaattggactaattatgtttatttgcacttgctgtgattcat |
375 |
Q |
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| T |
47242487 |
tgttgaaatgaagttaattggactaattctgtttattttcacttgctgtgattcat |
47242432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 211 - 360
Target Start/End: Complemental strand, 47249041 - 47248893
Alignment:
| Q |
211 |
atggaagctgacatactcaaaaccctgaactttgaaatgggcaaccctaatgtcatcacatttctaaagtaaatacattttttattgtaaatttgaatat |
310 |
Q |
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| T |
47249041 |
atggaagctgacatacttaagtccctaaactttgaaatgggcaaccctaatgtgataacatttcttaagtaaggacatttattactgtaaagttgaatat |
47248942 |
T |
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| Q |
311 |
ctaaagccttgttgaaatgaagttaattggactaattatgtttatttgca |
360 |
Q |
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| T |
47248941 |
ataaatccttgctgaaatgaa-ataattggactgaccatgtttatgtgca |
47248893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 199 - 374
Target Start/End: Complemental strand, 47253871 - 47253696
Alignment:
| Q |
199 |
taggttttgaagatggaagctgacatactcaaaaccctgaactttgaaatgggcaaccctaatgtcatcacatttctaaagtaaatacattttttattgt |
298 |
Q |
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| T |
47253871 |
taggttattaagatggaagctgatattcttaagtcattgaattttgaaatgggcaaccctcatgttaacacttttctcaagtaaggactgttaatattgt |
47253772 |
T |
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| Q |
299 |
aaatttgaatatctaaagccttgttgaaatgaagttaattggactaattatgtttatttgcacttgctgtgattca |
374 |
Q |
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| T |
47253771 |
taatttcaatatctaaagcctaattgaaatgaagttaattggattaattgtgtttatgtgcaattactgtgtttca |
47253696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 47249215 - 47249154
Alignment:
| Q |
20 |
cccaccaaaggccatagatttctgccaaatcactgataacacatatgatcttgacgaggtaa |
81 |
Q |
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|||||||||||| | |||||||||||||| ||||||||||| ||||| || || ||||||| |
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| T |
47249215 |
cccaccaaaggcagtggatttctgccaaattactgataacacctatgacctggaagaggtaa |
47249154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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