View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16060_low_1 (Length: 569)
Name: NF16060_low_1
Description: NF16060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16060_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 20 - 556
Target Start/End: Original strand, 46736736 - 46737260
Alignment:
| Q |
20 |
tatggaaatatcggagttgttgtctatggaaatatcggaggtatgttgcagccttcaactgtcatttgttggcttgcttgtcaatttactagttgacttc |
119 |
Q |
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| T |
46736736 |
tatggaaatatcggagttgttgtctatggaaatatcggaggtatgttgcagccttcaactgtcatttgttggcttgcttgtcaatttactggttgacttc |
46736835 |
T |
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| Q |
120 |
atatatattctatattagatattgaaaaagatattgaactagtattgtgttgcttgctggtattgtgagtcattgatttatgggatactcaatgtgtcgt |
219 |
Q |
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| T |
46736836 |
atatatattttatattagat------------attgaactagtattgtgttgcttgctggtattgtgagtcattgatttatgggatactcaatgtgtcgt |
46736923 |
T |
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| Q |
220 |
ctatgcattcatgactcatgagcattgatatctcttgttttgttgtttgagagattggatgtgtgctatgggataaaaggagcaattgttttttgaacag |
319 |
Q |
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| T |
46736924 |
ctatgcattcatgactcatgagcattgatatctcttgttttgttgtttgagagattggatgtgtgctatgggataaaaggagcaattgttttttgaacag |
46737023 |
T |
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| Q |
320 |
aacgtggatgaatgctatatcaacaggggatgttgttgctcatagaaaaccatgtatggatcatgatcacattccatattaatgaaggcatctgcactac |
419 |
Q |
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| T |
46737024 |
aacgtggatgaatgctatatcaacaggggatgttgttgctcatagaaaaccatgtatggatcatgatcgcattccatattaatgaaggcatctgcacaac |
46737123 |
T |
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| Q |
420 |
cattagtttcacggtacacatgacacactctaacttcacaatctgtttgaagtatccgacgaatatgttgcactagcctccaccaatctgtcaacactgt |
519 |
Q |
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| T |
46737124 |
cattagcttcacggtacacatgacacactctaacttcacaatctgtttgaagtatccgacgaatatgttgcactagcctccaccaatctgtctacactgt |
46737223 |
T |
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| Q |
520 |
attaggatcaagaatattttcagctaccacctttgct |
556 |
Q |
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| T |
46737224 |
attaggatcaagaatattttcagctaccacctttgct |
46737260 |
T |
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